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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:23:42 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:23:42 +0100 |
| commit | fe0b76e2159589227c2b4354897d69234a1192dc (patch) | |
| tree | 62572482a894af4baf78cea6b2a4e630eb5f8429 /gnu/packages/bioconductor.scm | |
| parent | 40a650571155933794523279adc435fd7d84fd2a (diff) | |
| download | patches-fe0b76e2159589227c2b4354897d69234a1192dc.tar patches-fe0b76e2159589227c2b4354897d69234a1192dc.tar.gz | |
gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c1c987e82d..d66dec6ba7 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -227,6 +227,37 @@ default." ) based on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) +(define-public r-bsgenome-hsapiens-ucsc-hg19 + (package + (name "r-bsgenome-hsapiens-ucsc-hg19") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Hsapiens.UCSC.hg19_" + version ".tar.gz")) + (sha256 + (base32 + "1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8")))) + (properties + `((upstream-name . "BSgenome.Hsapiens.UCSC.hg19"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/") + (synopsis "Full genome sequences for Homo sapiens") + (description + "This package provides full genome sequences for Homo sapiens as provided +by UCSC (hg19, February 2009) and stored in Biostrings objects.") + (license license:artistic2.0))) + (define-public r-genelendatabase (package (name "r-genelendatabase") |