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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-06-15 08:21:17 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-06-15 09:14:01 +0200 |
| commit | cf9a29b24c990aeadb673d233b3ca686249b2b10 (patch) | |
| tree | 28adc8a65efed2d55e700e8a3b77c4c7120da974 /gnu/packages/bioconductor.scm | |
| parent | a32279ffb68a23458177bf6a9b9cae5abea59e2e (diff) | |
| download | patches-cf9a29b24c990aeadb673d233b3ca686249b2b10.tar patches-cf9a29b24c990aeadb673d233b3ca686249b2b10.tar.gz | |
gnu: Add r-genomicinteractions.
* gnu/packages/bioconductor.scm (r-genomicinteractions): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 44 |
1 files changed, 42 insertions, 2 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 771f6a46d1..a6a8216ccb 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -24,10 +24,11 @@ #:use-module (guix download) #:use-module (guix build-system r) #:use-module (gnu packages) + #:use-module (gnu packages bioinformatics) #:use-module (gnu packages cran) #:use-module (gnu packages compression) - #:use-module (gnu packages statistics) - #:use-module (gnu packages bioinformatics)) + #:use-module (gnu packages graph) + #:use-module (gnu packages statistics)) (define-public r-bsgenome-dmelanogaster-ucsc-dm6 (package @@ -635,3 +636,42 @@ parsing of genetic sequencing data from ribosome profiling experiments.") for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.") (license license:gpl3))) + +(define-public r-genomicinteractions + (package + (name "r-genomicinteractions") + (version "1.14.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "GenomicInteractions" version)) + (sha256 + (base32 + "0cnagprxj0b7p6s29iyhqwxj7hgmrh75gj52y4dlil790d1bmq2q")))) + (properties + `((upstream-name . "GenomicInteractions"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-gviz" ,r-gviz) + ("r-igraph" ,r-igraph) + ("r-interactionset" ,r-interactionset) + ("r-iranges" ,r-iranges) + ("r-rsamtools" ,r-rsamtools) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-stringr" ,r-stringr))) + (home-page "https://github.com/ComputationalRegulatoryGenomicsICL/GenomicInteractions/") + (synopsis "R package for handling genomic interaction data") + (description + "This R package provides tools for handling genomic interaction data, +such as ChIA-PET/Hi-C, annotating genomic features with interaction +information and producing various plots and statistics.") + (license license:gpl3))) |