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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-05-06 00:09:30 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-05-06 00:14:59 +0200 |
| commit | 85c1d20fa6fe7cd295cac754939d98159c3ee459 (patch) | |
| tree | f35a53699dd795d44b012ec4996027fa9f160371 /gnu/packages/bioconductor.scm | |
| parent | c24adbbf07adcd3d32534413be97988895e351aa (diff) | |
| download | patches-85c1d20fa6fe7cd295cac754939d98159c3ee459.tar patches-85c1d20fa6fe7cd295cac754939d98159c3ee459.tar.gz | |
gnu: r-chippeakanno: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.0.
[propagated-inputs]: Add r-rtracklayer.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 17 insertions, 16 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 54849f30f3..ca001bc4ba 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1152,44 +1152,45 @@ determining dependencies between variables, code improvement suggestions.") (define-public r-chippeakanno (package (name "r-chippeakanno") - (version "3.16.1") + (version "3.18.0") (source (origin (method url-fetch) (uri (bioconductor-uri "ChIPpeakAnno" version)) (sha256 (base32 - "1x98d8iwrxjwdz1s5cnvi6flynw9gdkmara9gwf205qxgmy7j3a3")))) + "089v16mm5m0rlyyyd0d6rz8gwb852zf3bcdrrw70wanlfjn258q7")))) (properties `((upstream-name . "ChIPpeakAnno"))) (build-system r-build-system) (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics) + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) ("r-biocmanager" ,r-biocmanager) - ("r-biostrings" ,r-biostrings) - ("r-delayedarray" ,r-delayedarray) - ("r-go-db" ,r-go-db) ("r-biomart" ,r-biomart) + ("r-biostrings" ,r-biostrings) ("r-bsgenome" ,r-bsgenome) + ("r-dbi" ,r-dbi) + ("r-delayedarray" ,r-delayedarray) + ("r-ensembldb" ,r-ensembldb) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) ("r-genomicfeatures" ,r-genomicfeatures) ("r-genomicranges" ,r-genomicranges) - ("r-genomeinfodb" ,r-genomeinfodb) + ("r-go-db" ,r-go-db) + ("r-graph" ,r-graph) + ("r-idr" ,r-idr) ("r-iranges" ,r-iranges) - ("r-matrixstats" ,r-matrixstats) - ("r-annotationdbi" ,r-annotationdbi) ("r-limma" ,r-limma) + ("r-matrixstats" ,r-matrixstats) ("r-multtest" ,r-multtest) ("r-rbgl" ,r-rbgl) - ("r-graph" ,r-graph) ("r-regioner" ,r-regioner) - ("r-dbi" ,r-dbi) - ("r-ensembldb" ,r-ensembldb) - ("r-biobase" ,r-biobase) + ("r-rsamtools" ,r-rsamtools) + ("r-rtracklayer" ,r-rtracklayer) ("r-s4vectors" ,r-s4vectors) ("r-seqinr" ,r-seqinr) - ("r-idr" ,r-idr) - ("r-genomicalignments" ,r-genomicalignments) ("r-summarizedexperiment" ,r-summarizedexperiment) - ("r-rsamtools" ,r-rsamtools) ("r-venndiagram" ,r-venndiagram))) (home-page "http://bioconductor.org/packages/ChIPpeakAnno") (synopsis "Peaks annotation from ChIP-seq and ChIP-chip experiments") |