summaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2019-12-17 19:48:13 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-12-17 20:02:17 +0100
commit6ca6f8663b1d7b5d0e6c8f33bd9420d1ade832db (patch)
tree76395c10da74f7debaad4dbb78a9fe083a7f8fa7 /gnu/packages/bioconductor.scm
parent5aef09bd0ed72f8fec820eb7080bd68c735a39be (diff)
downloadpatches-6ca6f8663b1d7b5d0e6c8f33bd9420d1ade832db.tar
patches-6ca6f8663b1d7b5d0e6c8f33bd9420d1ade832db.tar.gz
gnu: Add r-biggr.
* gnu/packages/bioconductor.scm (r-biggr): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm30
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f506bb4690..f388f16e23 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6753,3 +6753,33 @@ manipulating hypergraphs.")
(description
"This package provides functions for visualizing hypergraphs.")
(license license:gpl2+)))
+
+(define-public r-biggr
+ (package
+ (name "r-biggr")
+ (version "1.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BiGGR" version))
+ (sha256
+ (base32
+ "1n2ypc84abmhn6br0yi87k7lvjc11k7abzhgvzdabc2ai1qgcqif"))))
+ (properties `((upstream-name . "BiGGR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-hyperdraw" ,r-hyperdraw)
+ ("r-hypergraph" ,r-hypergraph)
+ ("r-lim" ,r-lim)
+ ("r-limsolve" ,r-limsolve)
+ ("r-rsbml" ,r-rsbml)
+ ("r-stringr" ,r-stringr)))
+ (home-page "https://bioconductor.org/packages/BiGGR/")
+ (synopsis "Constraint based modeling using metabolic reconstruction databases")
+ (description
+ "This package provides an interface to simulate metabolic reconstruction
+from the @url{http://bigg.ucsd.edu/, BiGG database} and other metabolic
+reconstruction databases. The package facilitates @dfn{flux balance
+analysis} (FBA) and the sampling of feasible flux distributions. Metabolic
+networks and estimated fluxes can be visualized with hypergraphs.")
+ (license license:gpl3+)))