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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-04-03 16:29:49 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-04-03 17:42:18 +0200 |
| commit | 9800d859a74faba183f6d6e3d2957f4e0c5002e5 (patch) | |
| tree | 0b0ffb3f5ee057f3596a283940f5a13d8e2097f2 /gnu/packages/bioconductor.scm | |
| parent | 6b12f213633e035e8b6eb61c36cfdbd19b434754 (diff) | |
| download | patches-9800d859a74faba183f6d6e3d2957f4e0c5002e5.tar patches-9800d859a74faba183f6d6e3d2957f4e0c5002e5.tar.gz | |
gnu: Add r-zfpkm.
* gnu/packages/bioconductor.scm (r-zfpkm): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7928a10679..3800c2472e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4152,3 +4152,30 @@ analysis using several of the Bioconductor packages. It is intended to be deployed as a centralized bioinformatics resource for use by many users. Currently only Affymetrix oligonucleotide analysis is supported.") (license license:gpl2+))) + +(define-public r-zfpkm + (package + (name "r-zfpkm") + (version "1.4.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "zFPKM" version)) + (sha256 + (base32 + "0rvfrjxxvfng9fxxn316gm96v4rahx62vlk3axr2bzjbi1r4s8v5")))) + (properties `((upstream-name . "zFPKM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-checkmate" ,r-checkmate) + ("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/ronammar/zFPKM/") + (synopsis "Functions to facilitate zFPKM transformations") + (description + "This is a package to perform the zFPKM transform on RNA-seq FPKM data. +This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID +24215113).") + (license license:gpl3))) |