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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-04-03 16:24:54 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-04-03 17:42:18 +0200 |
| commit | 6b12f213633e035e8b6eb61c36cfdbd19b434754 (patch) | |
| tree | c006d87d9e701c68a0601ab2ed62422b241e2d71 /gnu/packages/bioconductor.scm | |
| parent | 7b5101c5bf9fb33768ae90e0e32ba2f67a491bc3 (diff) | |
| download | patches-6b12f213633e035e8b6eb61c36cfdbd19b434754.tar patches-6b12f213633e035e8b6eb61c36cfdbd19b434754.tar.gz | |
gnu: Add r-webbioc.
* gnu/packages/bioconductor.scm (r-webbioc): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 61ea05a7a7..7928a10679 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -32,6 +32,8 @@ #:use-module (gnu packages haskell) #:use-module (gnu packages image) #:use-module (gnu packages maths) + #:use-module (gnu packages netpbm) + #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages statistics) #:use-module (gnu packages web)) @@ -4117,3 +4119,36 @@ visualization of exonic read coverage.") widgets in R.") ;; Any version of the LGPL. (license license:lgpl3+))) + +(define-public r-webbioc + (package + (name "r-webbioc") + (version "1.54.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "webbioc" version)) + (sha256 + (base32 + "16n6wc9q51wfpmh9y77p53sqdqdd8pn50c67vf6h4n7gv5wgnpwi")))) + (build-system r-build-system) + (inputs + `(("netpbm" ,netpbm) + ("perl" ,perl))) + (propagated-inputs + `(("r-affy" ,r-affy) + ("r-annaffy" ,r-annaffy) + ("r-biobase" ,r-biobase) + ("r-biocmanager" ,r-biocmanager) + ("r-gcrma" ,r-gcrma) + ("r-multtest" ,r-multtest) + ("r-qvalue" ,r-qvalue) + ("r-vsn" ,r-vsn))) + (home-page "https://www.bioconductor.org/") + (synopsis "Bioconductor web interface") + (description + "This package provides an integrated web interface for doing microarray +analysis using several of the Bioconductor packages. It is intended to be +deployed as a centralized bioinformatics resource for use by many users. +Currently only Affymetrix oligonucleotide analysis is supported.") + (license license:gpl2+))) |