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authorRicardo Wurmus <rekado@elephly.net>2019-03-28 18:22:57 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-28 18:23:23 +0100
commitdbfe33758627782302ff7c9bfa11640fb0900476 (patch)
tree5ffc95a80e4abcd23bb71840366e2f9eb7822ca5 /gnu/packages/bioconductor.scm
parent8e15f861399333ac8346458eba34ab3d94c69a27 (diff)
downloadpatches-dbfe33758627782302ff7c9bfa11640fb0900476.tar
patches-dbfe33758627782302ff7c9bfa11640fb0900476.tar.gz
gnu: Add r-a4base.
* gnu/packages/bioconductor.scm (r-a4base): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bdf8938488..7b849a0718 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3055,3 +3055,35 @@ is used for preprocessing the arrays.")
"This is a package for the automated analysis of Affymetrix arrays. It
provides reporting features.")
(license license:gpl3)))
+
+(define-public r-a4base
+ (package
+ (name "r-a4base")
+ (version "1.30.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "a4Base" version))
+ (sha256
+ (base32
+ "0k9k3bv99msbwf2y416cz316ssaha2dxvmaddbl7z9037p8mjr70"))))
+ (properties `((upstream-name . "a4Base")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-a4core" ,r-a4core)
+ ("r-a4preproc" ,r-a4preproc)
+ ("r-annaffy" ,r-annaffy)
+ ("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-genefilter" ,r-genefilter)
+ ("r-glmnet" ,r-glmnet)
+ ("r-gplots" ,r-gplots)
+ ("r-limma" ,r-limma)
+ ("r-mpm" ,r-mpm)
+ ("r-multtest" ,r-multtest)))
+ (home-page "https://bioconductor.org/packages/a4Base/")
+ (synopsis "Automated Affymetrix array analysis base package")
+ (description
+ "This package provides basic features for the automated analysis of
+Affymetrix arrays.")
+ (license license:gpl3)))