diff options
| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2019-02-12 13:07:15 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-02-12 15:41:02 +0100 |
| commit | c18dccffa20bf09826758210d457d1df477f959c (patch) | |
| tree | b508f16577c7455055fab0d1c9dd37448319a3e7 /gnu/packages/bioconductor.scm | |
| parent | ab61ce3730a4ce9b6c5386bb8db2612180551252 (diff) | |
| download | patches-c18dccffa20bf09826758210d457d1df477f959c.tar patches-c18dccffa20bf09826758210d457d1df477f959c.tar.gz | |
gnu: Add r-dnacopy.
* gnu/packages/bioconductor.scm (r-dnacopy): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 20aabb0be4..9057158cde 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -27,6 +27,7 @@ #:use-module (gnu packages bioinformatics) #:use-module (gnu packages cran) #:use-module (gnu packages compression) + #:use-module (gnu packages gcc) #:use-module (gnu packages graph) #:use-module (gnu packages maths) #:use-module (gnu packages statistics) @@ -1176,3 +1177,25 @@ Viewer (SAV) files, access data, and generate QC plots.") "This package provides a quality control pipeline for ChIP-exo/nexus sequencing data.") (license license:gpl2+))) + +(define-public r-dnacopy + (package + (name "r-dnacopy") + (version "1.56.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "DNAcopy" version)) + (sha256 + (base32 + "04cqdqxhva66xwh1s2vffi56b9fcrqd4slcrvqasj5lp2rkjli82")))) + (properties `((upstream-name . "DNAcopy"))) + (build-system r-build-system) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://bioconductor.org/packages/DNAcopy") + (synopsis "DNA copy number data analysis") + (description + "This package implements the @dfn{circular binary segmentation} (CBS) +algorithm to segment DNA copy number data and identify genomic regions with +abnormal copy number.") + (license license:gpl2+))) |