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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-12-17 19:48:13 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-12-17 20:02:17 +0100 |
| commit | 6ca6f8663b1d7b5d0e6c8f33bd9420d1ade832db (patch) | |
| tree | 76395c10da74f7debaad4dbb78a9fe083a7f8fa7 /gnu/packages/bioconductor.scm | |
| parent | 5aef09bd0ed72f8fec820eb7080bd68c735a39be (diff) | |
| download | patches-6ca6f8663b1d7b5d0e6c8f33bd9420d1ade832db.tar patches-6ca6f8663b1d7b5d0e6c8f33bd9420d1ade832db.tar.gz | |
gnu: Add r-biggr.
* gnu/packages/bioconductor.scm (r-biggr): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f506bb4690..f388f16e23 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6753,3 +6753,33 @@ manipulating hypergraphs.") (description "This package provides functions for visualizing hypergraphs.") (license license:gpl2+))) + +(define-public r-biggr + (package + (name "r-biggr") + (version "1.22.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BiGGR" version)) + (sha256 + (base32 + "1n2ypc84abmhn6br0yi87k7lvjc11k7abzhgvzdabc2ai1qgcqif")))) + (properties `((upstream-name . "BiGGR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-hyperdraw" ,r-hyperdraw) + ("r-hypergraph" ,r-hypergraph) + ("r-lim" ,r-lim) + ("r-limsolve" ,r-limsolve) + ("r-rsbml" ,r-rsbml) + ("r-stringr" ,r-stringr))) + (home-page "https://bioconductor.org/packages/BiGGR/") + (synopsis "Constraint based modeling using metabolic reconstruction databases") + (description + "This package provides an interface to simulate metabolic reconstruction +from the @url{http://bigg.ucsd.edu/, BiGG database} and other metabolic +reconstruction databases. The package facilitates @dfn{flux balance +analysis} (FBA) and the sampling of feasible flux distributions. Metabolic +networks and estimated fluxes can be visualized with hypergraphs.") + (license license:gpl3+))) |