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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-25 16:09:07 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-25 16:09:07 +0100 |
| commit | 8a5460b4fb32962e835ec08907210f6416e53582 (patch) | |
| tree | 7a01352b145e5443944f007997d5710611d0608d /gnu/packages/bioconductor.scm | |
| parent | 3080b81af63c201decc96f8ba62ae174cdc574a2 (diff) | |
| download | patches-8a5460b4fb32962e835ec08907210f6416e53582.tar patches-8a5460b4fb32962e835ec08907210f6416e53582.tar.gz | |
gnu: Add r-triform.
* gnu/packages/bioconductor.scm (r-triform): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f687a03030..7bd126b5c0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2555,3 +2555,27 @@ surface of a flowcell.") for DNA and protein sequences. This package supports several sequence kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.") (license license:gpl2+))) + +(define-public r-triform + (package + (name "r-triform") + (version "1.24.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "triform" version)) + (sha256 + (base32 + "12ca24pv1r5vbw3rq345jqg7x3prrbsxk6445zikpzfblwmw0b4s")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-iranges" ,r-iranges) + ("r-yaml" ,r-yaml))) + (home-page "https://bioconductor.org/packages/triform/") + (synopsis "Find enriched regions in transcription factor ChIP-sequencing data") + (description + "The Triform algorithm uses model-free statistics to identify peak-like +distributions of TF ChIP sequencing reads, taking advantage of an improved +peak definition in combination with known profile characteristics.") + (license license:gpl2))) |