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authorRicardo Wurmus <rekado@elephly.net>2018-05-15 12:55:27 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-05-15 12:56:53 +0200
commit183db725a4e7ef6a0ae5170bfa0967bb2eafded7 (patch)
tree30259e9e619d37e3c918b6abfde4af9332a4b51d /gnu/packages/bioconductor.scm
parentf858e58f192a888273610e87baf34e68b7285e66 (diff)
downloadpatches-183db725a4e7ef6a0ae5170bfa0967bb2eafded7.tar
patches-183db725a4e7ef6a0ae5170bfa0967bb2eafded7.tar.gz
gnu: Add r-bsgenome-dmelanogaster-ucsc-dm6.
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3e6df50653..788e1e7def 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -29,6 +29,38 @@
#:use-module (gnu packages statistics)
#:use-module (gnu packages bioinformatics))
+(define-public r-bsgenome-dmelanogaster-ucsc-dm6
+ (package
+ (name "r-bsgenome-dmelanogaster-ucsc-dm6")
+ (version "1.4.1")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Dmelanogaster.UCSC.dm6_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1bhj0rdgf7lspw4xby9y9mf7v7jxxz8001bc8vw8kf04rjsx6060"))))
+ (properties
+ `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm6")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm6/")
+ (synopsis "Full genome sequences for Fly")
+ (description
+ "This package provides full genome sequences for Drosophila
+melanogaster (Fly) as provided by UCSC (dm6) and stored in Biostrings
+objects.")
+ (license license:artistic2.0)))
+
(define-public r-hpar
(package
(name "r-hpar")