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authorMark H Weaver <mhw@netris.org>2018-05-17 01:00:50 -0400
committerMark H Weaver <mhw@netris.org>2018-05-17 01:00:50 -0400
commit539bf8f2c071b53834829259bb3fabf0390c5dc6 (patch)
tree16672732afbf4c3f933e67ac677aa1877f6a7657 /gnu/packages/bioconductor.scm
parent903874328ed5e5ab766e36cee1b1a0989e8b24a9 (diff)
parent2cf8531f360ef390d3ec670cc150b106bab5eff1 (diff)
downloadpatches-539bf8f2c071b53834829259bb3fabf0390c5dc6.tar
patches-539bf8f2c071b53834829259bb3fabf0390c5dc6.tar.gz
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3e6df50653..788e1e7def 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -29,6 +29,38 @@
#:use-module (gnu packages statistics)
#:use-module (gnu packages bioinformatics))
+(define-public r-bsgenome-dmelanogaster-ucsc-dm6
+ (package
+ (name "r-bsgenome-dmelanogaster-ucsc-dm6")
+ (version "1.4.1")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Dmelanogaster.UCSC.dm6_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1bhj0rdgf7lspw4xby9y9mf7v7jxxz8001bc8vw8kf04rjsx6060"))))
+ (properties
+ `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm6")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm6/")
+ (synopsis "Full genome sequences for Fly")
+ (description
+ "This package provides full genome sequences for Drosophila
+melanogaster (Fly) as provided by UCSC (dm6) and stored in Biostrings
+objects.")
+ (license license:artistic2.0)))
+
(define-public r-hpar
(package
(name "r-hpar")