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authorRicardo Wurmus <rekado@elephly.net>2019-03-12 22:46:51 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-12 22:47:57 +0100
commit173c99601a9f7a0ac650c9b78213d98628319e24 (patch)
tree176871712b36944951ecb38e7aecde56705ad12e /gnu/packages/bioconductor.scm
parent5570804a69f6cf8a69f6da24411c99b129130893 (diff)
downloadpatches-173c99601a9f7a0ac650c9b78213d98628319e24.tar
patches-173c99601a9f7a0ac650c9b78213d98628319e24.tar.gz
gnu: Add r-deds.
* gnu/packages/bioconductor.scm (r-deds): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 44b81b0704..4fc7fcbf32 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1764,3 +1764,28 @@ estimation is performed using either the EM or CEM algorithm, and the slope
heuristics are used for model selection (i.e., to choose the number of
clusters).")
(license license:gpl3+)))
+
+(define-public r-deds
+ (package
+ (name "r-deds")
+ (version "1.56.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DEDS" version))
+ (sha256
+ (base32
+ "1zfgaar3bpss49zhs81mwlfzkx5lv92j8a64xd12ig88is24cw2c"))))
+ (properties `((upstream-name . "DEDS")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/DEDS/")
+ (synopsis "Differential expression via distance summary for microarray data")
+ (description
+ "This library contains functions that calculate various statistics of
+differential expression for microarray data, including t statistics, fold
+change, F statistics, SAM, moderated t and F statistics and B statistics. It
+also implements a new methodology called DEDS (Differential Expression via
+Distance Summary), which selects differentially expressed genes by integrating
+and summarizing a set of statistics using a weighted distance approach.")
+ ;; Any version of the LGPL.
+ (license license:lgpl3+)))