summaryrefslogtreecommitdiff
path: root/gnu/packages/algebra.scm
diff options
context:
space:
mode:
authorMarius Bakke <mbakke@fastmail.com>2018-08-22 18:14:04 +0200
committerMarius Bakke <mbakke@fastmail.com>2018-08-22 18:14:04 +0200
commit233df51ebc162bf95dfadf914914cbfbc6984651 (patch)
tree06fa8d78bbe97619450a88d8a38d01dc3775655b /gnu/packages/algebra.scm
parent43cec3fb1ea54dedee8a5f613c833958c76892f4 (diff)
parent180a8986e57a6cfb65a8cddabcb430f23801832b (diff)
downloadpatches-233df51ebc162bf95dfadf914914cbfbc6984651.tar
patches-233df51ebc162bf95dfadf914914cbfbc6984651.tar.gz
Merge branch 'master' into staging
Diffstat (limited to 'gnu/packages/algebra.scm')
-rw-r--r--gnu/packages/algebra.scm61
1 files changed, 28 insertions, 33 deletions
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index 9cc35ac5ec..45a3da1713 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -399,15 +399,21 @@ matrices, and polynomials over the integers and over finite fields.")
(define-public singular
(package
(name "singular")
- (version "4.0.3")
- (source (origin
- (method url-fetch)
- (uri (string-append "http://www.mathematik.uni-kl.de/ftp/pub/"
- "Math/Singular/SOURCES/"
- (string-join (string-split version #\.) "-")
- "/singular-" version ".tar.gz"))
- (sha256 (base32
- "0viidy2fz62rln9p0s9qfs7fnm55c6fw1agydd1py26gxylp1ksc"))))
+ (version "4.1.1p3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "http://www.mathematik.uni-kl.de/ftp/pub/Math/"
+ "Singular/SOURCES/"
+ (string-join
+ (string-split
+ (string-trim-right version #\p
+ 0 (1- (string-length version)))
+ #\.) "-")
+ "/singular-" version ".tar.gz"))
+ (sha256 (base32
+ "1qqj9bm9pkzm0iyycpvm8x6s79wws3nq60lz25h8x1q61h3426sm"))))
(build-system gnu-build-system)
(native-inputs
`(("doxygen" ,doxygen)
@@ -697,16 +703,15 @@ Sine Transform} (DST) and @dfn{Discrete Hartley Transform} (DHT).")
(define-public eigen
(package
(name "eigen")
- (version "3.3.4")
+ (version "3.3.5")
(source (origin
(method url-fetch)
(uri (string-append "https://bitbucket.org/eigen/eigen/get/"
version ".tar.bz2"))
(sha256
(base32
- "19m4406jvqnwh7kpcvx1lfx2vdc5zwia5q9ayv89bimg1gmln9fx"))
+ "1qh3yrwn78ms5yhwbpl5wvblk4gbz02cacdygxylr7i9xbrvylkk"))
(file-name (string-append name "-" version ".tar.bz2"))
- (patches (search-patches "eigen-arm-neon-fixes.patch"))
(modules '((guix build utils)))
(snippet
;; There are 3 test failures in the "unsupported" directory,
@@ -716,16 +721,6 @@ Sine Transform} (DST) and @dfn{Discrete Hartley Transform} (DHT).")
(substitute* "unsupported/CMakeLists.txt"
(("add_subdirectory\\(test.*")
"# Do not build the tests for unsupported features.\n"))
- (substitute* "CMakeLists.txt"
- ;; Work around
- ;; <http://eigen.tuxfamily.org/bz/show_bug.cgi?id=1114>.
- (("\"include/eigen3\"")
- "\"${CMAKE_INSTALL_PREFIX}/include/eigen3\""))
- (substitute* "test/bdcsvd.cpp"
- ;; See
- ;; https://bitbucket.org/eigen/eigen/commits/ea8c22ce6920e982d15245ee41d0531a46a28e5d
- ((".*svd_preallocate[^\n]*" &)
- (string-append "//" & " // Not supported by BDCSVD")))
#t))))
(build-system cmake-build-system)
(arguments
@@ -740,11 +735,11 @@ Sine Transform} (DST) and @dfn{Discrete Hartley Transform} (DHT).")
(setenv "EIGEN_SEED" "1") ;for reproducibility
;; First build the tests, in parallel. See
;; <http://eigen.tuxfamily.org/index.php?title=Tests>.
- (and (zero? (system* "make" "buildtests" dash-j))
+ (invoke "make" "buildtests" dash-j)
- ;; Then run 'CTest' with -V so we get more
- ;; details upon failure.
- (zero? (system* "ctest" "-V" dash-j)))))))))
+ ;; Then run 'CTest' with -V so we get more
+ ;; details upon failure.
+ (invoke "ctest" "-V" dash-j)))))))
(home-page "https://eigen.tuxfamily.org")
(synopsis "C++ template library for linear algebra")
(description
@@ -761,16 +756,16 @@ features, and more.")
(define-public xtensor
(package
(name "xtensor")
- (version "0.15.9")
+ (version "0.17.1")
(source (origin
- (method url-fetch)
- (uri (string-append
- "https://github.com/QuantStack/xtensor/archive/"
- version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/QuantStack/xtensor.git")
+ (commit version)))
(sha256
(base32
- "0mlsw4p1w5mh7pscddfdamz27zq3wml5qla3vbzgvif34vsqc8ra"))
- (file-name (string-append name "-" version ".tar.gz"))))
+ "0w40v5lp0hp8ihf8nnvak373sb5xx0768pxgiqh3nzn57wf8px4r"))
+ (file-name (git-file-name name version))))
(build-system cmake-build-system)
(native-inputs
`(("googletest" ,googletest)