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authorRicardo Wurmus <rekado@elephly.net>2019-03-13 09:08:22 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-13 13:17:51 +0100
commit7ed869f7962a07473af7f3e6671cda2f87792b77 (patch)
treedfa00d6a18e67454b5880a77dc559bc4f56056aa
parent2b6ab17f7d61bcee92194d8b155a709481a95244 (diff)
downloadpatches-7ed869f7962a07473af7f3e6671cda2f87792b77.tar
patches-7ed869f7962a07473af7f3e6671cda2f87792b77.tar.gz
gnu: Add r-nbpseq.
* gnu/packages/bioconductor.scm (r-nbpseq): New variable.
-rw-r--r--gnu/packages/bioconductor.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4fc7fcbf32..7127e963bb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1789,3 +1789,27 @@ Distance Summary), which selects differentially expressed genes by integrating
and summarizing a set of statistics using a weighted distance approach.")
;; Any version of the LGPL.
(license license:lgpl3+)))
+
+;; This is a CRAN package, but since it depends on a Bioconductor package we
+;; put it here.
+(define-public r-nbpseq
+ (package
+ (name "r-nbpseq")
+ (version "0.3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "NBPSeq" version))
+ (sha256
+ (base32
+ "0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"))))
+ (properties `((upstream-name . "NBPSeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-qvalue" ,r-qvalue)))
+ (home-page "https://cran.r-project.org/web/packages/NBPSeq")
+ (synopsis "Negative binomial models for RNA-Seq data")
+ (description
+ "This package provides negative binomial models for two-group comparisons
+and regression inferences from RNA-sequencing data.")
+ (license license:gpl2)))