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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-29 22:19:30 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-30 08:55:45 +0100 |
| commit | 4675b3cfa3dbf13056dec550d5a72fbf4a73def7 (patch) | |
| tree | f971888b4340810d1323fd9972912182b7e3b13c | |
| parent | e99380d67b459128807f27184b93f0b2a9e6c3fd (diff) | |
| download | patches-4675b3cfa3dbf13056dec550d5a72fbf4a73def7.tar patches-4675b3cfa3dbf13056dec550d5a72fbf4a73def7.tar.gz | |
gnu: Add r-simpleaffy.
* gnu/packages/bioconductor.scm (r-simpleaffy): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 91a5a66ec2..ade51157c4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3798,3 +3798,31 @@ affinity is estimated in an NSB experiment in which only NSB but no gene-specific bidning is expected.") ;; Any version of the LGPL (license license:lgpl2.1+))) + +(define-public r-simpleaffy + (package + (name "r-simpleaffy") + (version "2.58.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "simpleaffy" version)) + (sha256 + (base32 + "0bry0d2vw0w2rrpnmfm1kl5v4rdclypmy33jvs9l43vd6vx2ra9s")))) + (build-system r-build-system) + (propagated-inputs + `(("r-affy" ,r-affy) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-gcrma" ,r-gcrma) + ("r-genefilter" ,r-genefilter))) + (home-page "https://bioconductor.org/packages/simpleaffy/") + (synopsis "Very simple high level analysis of Affymetrix data") + (description + "This package provides high level functions for reading Affy @file{.CEL} +files, phenotypic data, and then computing simple things with it, such as +t-tests, fold changes and the like. It makes heavy use of the @code{affy} +library. It also has some basic scatter plot functions and mechanisms for +generating high resolution journal figures.") + (license license:gpl2+))) |