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authorRicardo Wurmus <rekado@elephly.net>2019-03-29 22:30:39 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-30 08:55:45 +0100
commit59cf26292f8aa13c4a98687371a2dafa63ccc932 (patch)
tree4ceeb1408b797649899879075383c713f9406c7e
parent8d1990d495f115a79f6de0f455456b27a3344812 (diff)
downloadpatches-59cf26292f8aa13c4a98687371a2dafa63ccc932.tar
patches-59cf26292f8aa13c4a98687371a2dafa63ccc932.tar.gz
gnu: Add r-quantro.
* gnu/packages/bioconductor.scm (r-quantro): New variable.
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 42779d264c..6b11b47eae 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3848,3 +3848,34 @@ generating high resolution journal figures.")
GeneChip expression data and reproducibility analysis of human whole genome
chips with the MAQC reference datasets.")
(license license:artistic2.0)))
+
+(define-public r-quantro
+ (package
+ (name "r-quantro")
+ (version "1.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "quantro" version))
+ (sha256
+ (base32
+ "1777gjgn855f04yv7hx70h9l8idmjzamkpazaq2cdr8qzhxwy2ib"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-doparallel" ,r-doparallel)
+ ("r-foreach" ,r-foreach)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-iterators" ,r-iterators)
+ ("r-minfi" ,r-minfi)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)))
+ (home-page "https://bioconductor.org/packages/quantro/")
+ (synopsis "Test for when to use quantile normalization")
+ (description
+ "This package provides a data-driven test for the assumptions of quantile
+normalization using raw data such as objects that inherit eSets (e.g.
+ExpressionSet, MethylSet). Group level information about each sample (such as
+Tumor / Normal status) must also be provided because the test assesses if
+there are global differences in the distributions between the user-defined
+groups.")
+ (license license:gpl3+)))