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| author | Roel Janssen <roel@gnu.org> | 2018-04-24 13:33:56 +0200 |
|---|---|---|
| committer | Roel Janssen <roel@gnu.org> | 2018-04-24 13:33:56 +0200 |
| commit | a5b56a5346ce14c2d5f02ef3e1b4964d8dd4f8d5 (patch) | |
| tree | a860fd0b7f36994784ee4a46f12c4e7bc1938373 | |
| parent | be65267f93d9c1981000b4fcbaffc477b452b568 (diff) | |
| download | patches-a5b56a5346ce14c2d5f02ef3e1b4964d8dd4f8d5.tar patches-a5b56a5346ce14c2d5f02ef3e1b4964d8dd4f8d5.tar.gz | |
gnu: Add r-diffbind.
* gnu/packages/bioconductor.scm (r-diffbind): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 09581d9fde..e43b3ff928 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -23,6 +23,8 @@ #:use-module (guix download) #:use-module (guix build-system r) #:use-module (gnu packages) + #:use-module (gnu packages cran) + #:use-module (gnu packages compression) #:use-module (gnu packages statistics) #:use-module (gnu packages bioinformatics)) @@ -70,3 +72,45 @@ the Human Protein Atlas project.") customizable permutation tests to assess the association between genomic region sets and other genomic features.") (license license:artistic2.0))) + +(define-public r-diffbind + (package + (name "r-diffbind") + (version "2.6.6") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "DiffBind" version)) + (sha256 + (base32 + "1sm5h6nq77hjfis6kr1nqyizcxgfz87dgpqc4fxlfqkmsd9n3vkp")))) + (properties `((upstream-name . "DiffBind"))) + (build-system r-build-system) + (inputs + `(("zlib" ,zlib))) + (propagated-inputs + `(("r-amap" ,r-amap) + ("r-biocparallel" ,r-biocparallel) + ("r-deseq2" ,r-deseq2) + ("r-dplyr" ,r-dplyr) + ("r-edger" ,r-edger) + ("r-genomicalignments" ,r-genomicalignments) + ("r-ggrepel" ,r-ggrepel) + ("r-gplots" ,r-gplots) + ("r-iranges" ,r-iranges) + ("r-lattice" ,r-lattice) + ("r-limma" ,r-limma) + ("r-locfit" ,r-locfit) + ("r-rcolorbrewer" , r-rcolorbrewer) + ("r-rcpp" ,r-rcpp) + ("r-rsamtools" ,r-rsamtools) + ("r-s4vectors" ,r-s4vectors) + ("r-systempiper" ,r-systempiper) + ("r-zlibbioc" ,r-zlibbioc))) + (home-page "http://bioconductor.org/packages/DiffBind") + (synopsis "Differential binding analysis of ChIP-Seq peak data") + (description + "This package computes differentially bound sites from multiple +ChIP-seq experiments using affinity (quantitative) data. Also enables +occupancy (overlap) analysis and plotting functions.") + (license license:artistic2.0))) |