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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-08 22:59:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-08 23:00:07 +0100 |
| commit | 8b6acb1f20638de5b90c284baacc6058f7ffaa62 (patch) | |
| tree | 80d2223e0208245f3367a7a67dbf6d136a3fad5f | |
| parent | f87dcb4d75d9bef74ae7f97962435402ad2078a7 (diff) | |
| download | patches-8b6acb1f20638de5b90c284baacc6058f7ffaa62.tar patches-8b6acb1f20638de5b90c284baacc6058f7ffaa62.tar.gz | |
gnu: blast+: Update to 2.7.1.
* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1.
[inputs]: Add lmdb.
[source]: Remove obsolete patch.
* gnu/package/patches/blast+-fix-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
| -rw-r--r-- | gnu/local.mk | 1 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 6 | ||||
| -rw-r--r-- | gnu/packages/patches/blast+-fix-makefile.patch | 15 |
3 files changed, 3 insertions, 19 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index 2971f3f87b..aeeedf45fc 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -670,7 +670,6 @@ dist_patch_DATA = \ %D%/packages/patches/beignet-correct-file-names.patch \ %D%/packages/patches/biber-fix-encoding-write.patch \ %D%/packages/patches/binutils-loongson-workaround.patch \ - %D%/packages/patches/blast+-fix-makefile.patch \ %D%/packages/patches/boost-fix-icu-build.patch \ %D%/packages/patches/byobu-writable-status.patch \ %D%/packages/patches/calibre-no-updates-dialog.patch \ diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ced948a5d1..26fcc3a41a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1092,7 +1092,7 @@ package provides command line tools using the Bio++ library.") (define-public blast+ (package (name "blast+") - (version "2.6.0") + (version "2.7.1") (source (origin (method url-fetch) (uri (string-append @@ -1100,8 +1100,7 @@ package provides command line tools using the Bio++ library.") version "/ncbi-blast-" version "+-src.tar.gz")) (sha256 (base32 - "15n937pw5aqmyfjb6l387d18grqbb96l63d5xj4l7yyh0zbf2405")) - (patches (search-patches "blast+-fix-makefile.patch")) + "1jlq0afxxgczpp35k6mxh8mn4jzq7vqcnaixk166sfj10wq8v9qh")) (modules '((guix build utils))) (snippet '(begin @@ -1209,6 +1208,7 @@ package provides command line tools using the Bio++ library.") "include")) ; 33 MB (inputs `(("bzip2" ,bzip2) + ("lmdb" ,lmdb) ("zlib" ,zlib) ("pcre" ,pcre) ("perl" ,perl) diff --git a/gnu/packages/patches/blast+-fix-makefile.patch b/gnu/packages/patches/blast+-fix-makefile.patch deleted file mode 100644 index bfa46a7e51..0000000000 --- a/gnu/packages/patches/blast+-fix-makefile.patch +++ /dev/null @@ -1,15 +0,0 @@ -Without this patch, the 'make install' attempts to 'install' a directory, which causes an error. - -diff --git a/c++/src/build-system/Makefile.in.top b/c++/src/build-system/Makefile.in.top -index 1abe44f..d6000b3 100644 ---- a/c++/src/build-system/Makefile.in.top -+++ b/c++/src/build-system/Makefile.in.top -@@ -51,7 +51,7 @@ install-toolkit: - done - cd $(includedir0) && find * -name CVS -prune -o -print |\ - cpio -pd $(pincludedir) -- $(INSTALL) -m 644 $(incdir)/* $(pincludedir) -+ cp -R $(incdir)/* $(pincludedir) - ## set up appropriate build and status directories somewhere under $(libdir)? - - install-gbench: |