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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-10-05 14:27:20 +0200
committerRicardo Wurmus <rekado@elephly.net>2016-10-06 10:33:43 +0200
commitfc47c7d635e1ea65df5da8ef29cb56440835f71b (patch)
tree6f2713828d0c6478b708469f36daaed44d2a462d
parent6a4cbc6f1261a2c94a8bb05d2765a183235a1b9f (diff)
downloadpatches-fc47c7d635e1ea65df5da8ef29cb56440835f71b.tar
patches-fc47c7d635e1ea65df5da8ef29cb56440835f71b.tar.gz
gnu: Add r-bsgenome-celegans-ucsc-ce10.
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ac46fe4bcc..76e6c310ef 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6929,6 +6929,38 @@ elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.")
(license license:artistic2.0)))
+(define-public r-bsgenome-celegans-ucsc-ce10
+ (package
+ (name "r-bsgenome-celegans-ucsc-ce10")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Celegans.UCSC.ce10_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
+ (properties
+ `((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "http://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
+ (synopsis "Full genome sequences for Worm")
+ (description
+ "This package provides full genome sequences for Caenorhabditis
+elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
+objects.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-dmelanogaster-ucsc-dm3
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm3")