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authorRicardo Wurmus <rekado@elephly.net>2019-09-15 20:58:06 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-09-15 20:58:26 +0200
commit01c7ba9982dc83d584dade304ccd921e655d0a46 (patch)
tree0aff285ed77d4a31b034634be8e0672ba78c01cd
parent15184fb386d9b71b122e40f665d2f42bf4a13ddc (diff)
downloadpatches-01c7ba9982dc83d584dade304ccd921e655d0a46.tar
patches-01c7ba9982dc83d584dade304ccd921e655d0a46.tar.gz
gnu: Add r-oligoclasses.
* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
-rw-r--r--gnu/packages/bioconductor.scm35
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d382ce1dfc..be9f7579b6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1224,6 +1224,41 @@ browser.")
"This package provides functions for plotting genomic data.")
(license license:artistic2.0)))
+(define-public r-oligoclasses
+ (package
+ (name "r-oligoclasses")
+ (version "1.46.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "oligoClasses" version))
+ (sha256
+ (base32
+ "0z86zrmn80kcy6fgb9i9zs82vhim73n8hlkqy7y8sbb2jwksdr72"))))
+ (properties `((upstream-name . "oligoClasses")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-affyio" ,r-affyio)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocmanager" ,r-biocmanager)
+ ("r-biostrings" ,r-biostrings)
+ ("r-dbi" ,r-dbi)
+ ("r-ff" ,r-ff)
+ ("r-foreach" ,r-foreach)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/oligoClasses/")
+ (synopsis "Classes for high-throughput arrays")
+ (description
+ "This package contains class definitions, validity checks, and
+initialization methods for classes used by the @code{oligo} and @code{crlmm}
+packages.")
+ (license license:gpl2+)))
+
(define-public r-qvalue
(package
(name "r-qvalue")