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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 17:26:26 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 23:32:45 +0100 |
| commit | c49102ecca08d4ad38c19f519195aa9d0cece0f1 (patch) | |
| tree | e2aa457f82bf06df767c09c3fb190502848eae5a | |
| parent | 30eb4e37c8b24c3e8ecdc1147035d1735816fa94 (diff) | |
| download | patches-c49102ecca08d4ad38c19f519195aa9d0cece0f1.tar patches-c49102ecca08d4ad38c19f519195aa9d0cece0f1.tar.gz | |
gnu: Add r-hitc.
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 60772b576a..bf474602bb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10166,6 +10166,35 @@ intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.") (license license:gpl2+))) +(define-public r-hitc + (package + (name "r-hitc") + (version "1.22.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "HiTC" version)) + (sha256 + (base32 + "0288xa1jy6nzvz2ha07csmp6dirjw5r7p9vy69q2wsbyzr02ymkp")))) + (properties `((upstream-name . "HiTC"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-matrix" ,r-matrix) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rtracklayer" ,r-rtracklayer))) + (home-page "https://bioconductor.org/packages/HiTC") + (synopsis "High throughput chromosome conformation capture analysis") + (description + "The HiTC package was developed to explore high-throughput \"C\" data +such as 5C or Hi-C. Dedicated R classes as well as standard methods for +quality controls, normalization, visualization, and further analysis are also +provided.") + (license license:artistic2.0))) + (define-public r-qvalue (package (name "r-qvalue") |