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authorMarius Bakke <mbakke@fastmail.com>2019-08-04 13:41:27 +0200
committerMarius Bakke <mbakke@fastmail.com>2019-08-04 13:41:27 +0200
commitf35d3132654bd1be5c7453f9eb43eb6e9de85a15 (patch)
treef62c3a069153d1612a5c270e991eebe43c4f5cae
parent1dff73acf908125b292de2ab2fc5b25155ad77d8 (diff)
parente920037793faeebf8fb2a918b50a1751b125a0af (diff)
downloadpatches-f35d3132654bd1be5c7453f9eb43eb6e9de85a15.tar
patches-f35d3132654bd1be5c7453f9eb43eb6e9de85a15.tar.gz
Merge branch 'master' into staging
-rw-r--r--Makefile.am1
-rw-r--r--doc/guix.texi12
-rw-r--r--gnu/local.mk4
-rw-r--r--gnu/machine/ssh.scm189
-rw-r--r--gnu/packages/admin.scm54
-rw-r--r--gnu/packages/algebra.scm4
-rw-r--r--gnu/packages/bioconductor.scm129
-rw-r--r--gnu/packages/chromium.scm98
-rw-r--r--gnu/packages/compression.scm4
-rw-r--r--gnu/packages/cran.scm299
-rw-r--r--gnu/packages/crypto.scm11
-rw-r--r--gnu/packages/dictionaries.scm4
-rw-r--r--gnu/packages/dns.scm5
-rw-r--r--gnu/packages/docker.scm3
-rw-r--r--gnu/packages/education.scm4
-rw-r--r--gnu/packages/emacs-xyz.scm225
-rw-r--r--gnu/packages/finance.scm39
-rw-r--r--gnu/packages/fontutils.scm2
-rw-r--r--gnu/packages/games.scm8
-rw-r--r--gnu/packages/golang.scm605
-rw-r--r--gnu/packages/graphics.scm16
-rw-r--r--gnu/packages/guile.scm44
-rw-r--r--gnu/packages/image-viewers.scm4
-rw-r--r--gnu/packages/image.scm4
-rw-r--r--gnu/packages/kde.scm4
-rw-r--r--gnu/packages/kodi.scm4
-rw-r--r--gnu/packages/linux.scm46
-rw-r--r--gnu/packages/lisp.scm85
-rw-r--r--gnu/packages/mail.scm141
-rw-r--r--gnu/packages/man.scm4
-rw-r--r--gnu/packages/multiprecision.scm25
-rw-r--r--gnu/packages/networking.scm28
-rw-r--r--gnu/packages/patches/dkimproxy-add-ipv6-support.patch75
-rw-r--r--gnu/packages/patches/libvirt-remove-ATTRIBUTE_UNUSED.patch34
-rw-r--r--gnu/packages/patches/pcre2-fix-jit_match-crash.patch25
-rw-r--r--gnu/packages/pcre.scm12
-rw-r--r--gnu/packages/php.scm12
-rw-r--r--gnu/packages/python-xyz.scm25
-rw-r--r--gnu/packages/regex.scm4
-rw-r--r--gnu/packages/scanner.scm12
-rw-r--r--gnu/packages/sdl.scm4
-rw-r--r--gnu/packages/shells.scm9
-rw-r--r--gnu/packages/syncthing.scm155
-rw-r--r--gnu/packages/telephony.scm7
-rw-r--r--gnu/packages/terminals.scm30
-rw-r--r--gnu/packages/text-editors.scm138
-rw-r--r--gnu/packages/textutils.scm47
-rw-r--r--gnu/packages/tls.scm28
-rw-r--r--gnu/packages/video.scm91
-rw-r--r--gnu/packages/virtualization.scm16
-rw-r--r--gnu/packages/web.scm87
-rw-r--r--gnu/packages/wine.scm15
-rw-r--r--gnu/packages/xorg.scm4
-rw-r--r--gnu/services/herd.scm6
-rw-r--r--gnu/tests/reconfigure.scm262
-rw-r--r--guix/build/cargo-build-system.scm48
-rw-r--r--guix/build/go-build-system.scm3
-rw-r--r--guix/discovery.scm8
-rw-r--r--guix/gexp.scm49
-rw-r--r--guix/git.scm69
-rw-r--r--guix/scripts/build.scm13
-rw-r--r--guix/scripts/system.scm181
-rw-r--r--guix/scripts/system/reconfigure.scm232
-rw-r--r--tests/gexp.scm19
-rw-r--r--tests/guix-build-branch.sh8
-rw-r--r--tests/services.scm4
66 files changed, 3001 insertions, 836 deletions
diff --git a/Makefile.am b/Makefile.am
index 7fa51d17ac..0bd85e8fcf 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -249,6 +249,7 @@ MODULES = \
guix/scripts/describe.scm \
guix/scripts/system.scm \
guix/scripts/system/search.scm \
+ guix/scripts/system/reconfigure.scm \
guix/scripts/lint.scm \
guix/scripts/challenge.scm \
guix/scripts/import/crate.scm \
diff --git a/doc/guix.texi b/doc/guix.texi
index c2da4ce173..cb60d5c7b7 100644
--- a/doc/guix.texi
+++ b/doc/guix.texi
@@ -5854,8 +5854,11 @@ should be added to the package definition via the
In its @code{configure} phase, this build system will make any source inputs
specified in the @code{#:cargo-inputs} and @code{#:cargo-development-inputs}
-parameters available to cargo. The @code{install} phase installs any crate
-the binaries if they are defined by the crate.
+parameters available to cargo. The @code{update-cargo-lock} phase will,
+when there is a @code{Cargo.lock} file, update the @code{Cargo.lock} file
+with the inputs and their versions available at build time. The
+@code{install} phase installs any crate the binaries if they are defined by
+the crate.
@end defvr
@cindex Clojure (programming language)
@@ -7439,7 +7442,8 @@ This is the declarative counterpart of @code{gexp->derivation}.
@end deffn
@deffn {Monadic Procedure} gexp->script @var{name} @var{exp} @
- [#:guile (default-guile)] [#:module-path %load-path]
+ [#:guile (default-guile)] [#:module-path %load-path] @
+ [#:system (%current-system)] [#:target #f]
Return an executable script @var{name} that runs @var{exp} using
@var{guile}, with @var{exp}'s imported modules in its search path.
Look up @var{exp}'s modules in @var{module-path}.
@@ -8048,7 +8052,7 @@ guix build --with-branch=guile-sqlite3=master cuirass
@item --with-commit=@var{package}=@var{commit}
This is similar to @code{--with-branch}, except that it builds from
@var{commit} rather than the tip of a branch. @var{commit} must be a valid
-Git commit SHA1 identifier.
+Git commit SHA1 identifier or a tag.
@end table
@node Additional Build Options
diff --git a/gnu/local.mk b/gnu/local.mk
index eb3b0dcd3b..ca15f3096d 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -597,6 +597,7 @@ GNU_SYSTEM_MODULES = \
%D%/tests/mail.scm \
%D%/tests/messaging.scm \
%D%/tests/networking.scm \
+ %D%/tests/reconfigure.scm \
%D%/tests/rsync.scm \
%D%/tests/security-token.scm \
%D%/tests/singularity.scm \
@@ -756,6 +757,7 @@ dist_patch_DATA = \
%D%/packages/patches/dfu-programmer-fix-libusb.patch \
%D%/packages/patches/diffutils-gets-undeclared.patch \
%D%/packages/patches/diffutils-getopt.patch \
+ %D%/packages/patches/dkimproxy-add-ipv6-support.patch \
%D%/packages/patches/docbook-xsl-nonrecursive-string-subst.patch \
%D%/packages/patches/doc++-include-directives.patch \
%D%/packages/patches/doc++-segfault-fix.patch \
@@ -1042,6 +1044,7 @@ dist_patch_DATA = \
%D%/packages/patches/libutils-add-includes.patch \
%D%/packages/patches/libutils-remove-damaging-includes.patch \
%D%/packages/patches/libvdpau-va-gl-unbundle.patch \
+ %D%/packages/patches/libvirt-remove-ATTRIBUTE_UNUSED.patch \
%D%/packages/patches/libvpx-CVE-2016-2818.patch \
%D%/packages/patches/libvpx-use-after-free-in-postproc.patch \
%D%/packages/patches/libxslt-generated-ids.patch \
@@ -1162,6 +1165,7 @@ dist_patch_DATA = \
%D%/packages/patches/patchelf-rework-for-arm.patch \
%D%/packages/patches/patchutils-test-perms.patch \
%D%/packages/patches/patch-hurd-path-max.patch \
+ %D%/packages/patches/pcre2-fix-jit_match-crash.patch \
%D%/packages/patches/perl-autosplit-default-time.patch \
%D%/packages/patches/perl-deterministic-ordering.patch \
%D%/packages/patches/perl-finance-quote-unuse-mozilla-ca.patch \
diff --git a/gnu/machine/ssh.scm b/gnu/machine/ssh.scm
index 278d43c10f..552eafa9de 100644
--- a/gnu/machine/ssh.scm
+++ b/gnu/machine/ssh.scm
@@ -17,23 +17,21 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu machine ssh)
- #:use-module (gnu bootloader)
#:use-module (gnu machine)
#:autoload (gnu packages gnupg) (guile-gcrypt)
- #:use-module (gnu services)
- #:use-module (gnu services shepherd)
#:use-module (gnu system)
- #:use-module (guix derivations)
#:use-module (guix gexp)
#:use-module (guix i18n)
#:use-module (guix modules)
#:use-module (guix monads)
#:use-module (guix records)
#:use-module (guix remote)
+ #:use-module (guix scripts system reconfigure)
#:use-module (guix ssh)
#:use-module (guix store)
#:use-module (ice-9 match)
#:use-module (srfi srfi-19)
+ #:use-module (srfi srfi-26)
#:use-module (srfi srfi-35)
#:export (managed-host-environment-type
@@ -105,118 +103,6 @@ an environment type of 'managed-host."
;;; System deployment.
;;;
-(define (switch-to-system machine)
- "Monadic procedure creating a new generation on MACHINE and execute the
-activation script for the new system configuration."
- (define (remote-exp drv script)
- (with-extensions (list guile-gcrypt)
- (with-imported-modules (source-module-closure '((guix config)
- (guix profiles)
- (guix utils)))
- #~(begin
- (use-modules (guix config)
- (guix profiles)
- (guix utils))
-
- (define %system-profile
- (string-append %state-directory "/profiles/system"))
-
- (let* ((system #$drv)
- (number (1+ (generation-number %system-profile)))
- (generation (generation-file-name %system-profile number)))
- (switch-symlinks generation system)
- (switch-symlinks %system-profile generation)
- ;; The implementation of 'guix system reconfigure' saves the
- ;; load path and environment here. This is unnecessary here
- ;; because each invocation of 'remote-eval' runs in a distinct
- ;; Guile REPL.
- (setenv "GUIX_NEW_SYSTEM" system)
- ;; The activation script may write to stdout, which confuses
- ;; 'remote-eval' when it attempts to read a result from the
- ;; remote REPL. We work around this by forcing the output to a
- ;; string.
- (with-output-to-string
- (lambda ()
- (primitive-load #$script))))))))
-
- (let* ((os (machine-system machine))
- (script (operating-system-activation-script os)))
- (mlet* %store-monad ((drv (operating-system-derivation os)))
- (machine-remote-eval machine (remote-exp drv script)))))
-
-;; XXX: Currently, this does NOT attempt to restart running services. This is
-;; also the case with 'guix system reconfigure'.
-;;
-;; See <https://issues.guix.info/issue/33508>.
-(define (upgrade-shepherd-services machine)
- "Monadic procedure unloading and starting services on the remote as needed
-to realize the MACHINE's system configuration."
- (define target-services
- ;; Monadic expression evaluating to a list of (name output-path) pairs for
- ;; all of MACHINE's services.
- (mapm %store-monad
- (lambda (service)
- (mlet %store-monad ((file ((compose lower-object
- shepherd-service-file)
- service)))
- (return (list (shepherd-service-canonical-name service)
- (derivation->output-path file)))))
- (service-value
- (fold-services (operating-system-services (machine-system machine))
- #:target-type shepherd-root-service-type))))
-
- (define (remote-exp target-services)
- (with-imported-modules '((gnu services herd))
- #~(begin
- (use-modules (gnu services herd)
- (srfi srfi-1))
-
- (define running
- (filter live-service-running (current-services)))
-
- (define (essential? service)
- ;; Return #t if SERVICE is essential and should not be unloaded
- ;; under any circumstance.
- (memq (first (live-service-provision service))
- '(root shepherd)))
-
- (define (obsolete? service)
- ;; Return #t if SERVICE can be safely unloaded.
- (and (not (essential? service))
- (every (lambda (requirements)
- (not (memq (first (live-service-provision service))
- requirements)))
- (map live-service-requirement running))))
-
- (define to-unload
- (filter obsolete?
- (remove (lambda (service)
- (memq (first (live-service-provision service))
- (map first '#$target-services)))
- running)))
-
- (define to-start
- (remove (lambda (service-pair)
- (memq (first service-pair)
- (map (compose first live-service-provision)
- running)))
- '#$target-services))
-
- ;; Unload obsolete services.
- (for-each (lambda (service)
- (false-if-exception
- (unload-service service)))
- to-unload)
-
- ;; Load the service files for any new services and start them.
- (load-services/safe (map second to-start))
- (for-each start-service (map first to-start))
-
- #t)))
-
- (mlet %store-monad ((target-services target-services))
- (machine-remote-eval machine (remote-exp target-services))))
-
(define (machine-boot-parameters machine)
"Monadic procedure returning a list of 'boot-parameters' for the generations
of MACHINE's system profile, ordered from most recent to oldest."
@@ -275,71 +161,20 @@ of MACHINE's system profile, ordered from most recent to oldest."
(boot-parameters-kernel-arguments params))))))))
generations))))
-(define (install-bootloader machine)
- "Create a bootloader entry for the new system generation on MACHINE, and
-configure the bootloader to boot that generation by default."
- (define bootloader-installer-script
- (@@ (guix scripts system) bootloader-installer-script))
-
- (define (remote-exp installer bootcfg bootcfg-file)
- (with-extensions (list guile-gcrypt)
- (with-imported-modules (source-module-closure '((gnu build install)
- (guix store)
- (guix utils)))
- #~(begin
- (use-modules (gnu build install)
- (guix store)
- (guix utils))
- (let* ((gc-root (string-append "/" %gc-roots-directory "/bootcfg"))
- (temp-gc-root (string-append gc-root ".new")))
-
- (switch-symlinks temp-gc-root gc-root)
-
- (unless (false-if-exception
- (begin
- ;; The implementation of 'guix system reconfigure'
- ;; saves the load path here. This is unnecessary here
- ;; because each invocation of 'remote-eval' runs in a
- ;; distinct Guile REPL.
- (install-boot-config #$bootcfg #$bootcfg-file "/")
- ;; The installation script may write to stdout, which
- ;; confuses 'remote-eval' when it attempts to read a
- ;; result from the remote REPL. We work around this
- ;; by forcing the output to a string.
- (with-output-to-string
- (lambda ()
- (primitive-load #$installer)))))
- (delete-file temp-gc-root)
- (error "failed to install bootloader"))
-
- (rename-file temp-gc-root gc-root)
- #t)))))
-
- (mlet* %store-monad ((boot-parameters (machine-boot-parameters machine)))
- (let* ((os (machine-system machine))
- (bootloader ((compose bootloader-configuration-bootloader
- operating-system-bootloader)
- os))
- (bootloader-target (bootloader-configuration-target
- (operating-system-bootloader os)))
- (installer (bootloader-installer-script
- (bootloader-installer bootloader)
- (bootloader-package bootloader)
- bootloader-target
- "/"))
- (menu-entries (map boot-parameters->menu-entry boot-parameters))
- (bootcfg (operating-system-bootcfg os menu-entries))
- (bootcfg-file (bootloader-configuration-file bootloader)))
- (machine-remote-eval machine (remote-exp installer bootcfg bootcfg-file)))))
-
(define (deploy-managed-host machine)
"Internal implementation of 'deploy-machine' for MACHINE instances with an
environment type of 'managed-host."
(maybe-raise-unsupported-configuration-error machine)
- (mbegin %store-monad
- (switch-to-system machine)
- (upgrade-shepherd-services machine)
- (install-bootloader machine)))
+ (mlet %store-monad ((boot-parameters (machine-boot-parameters machine)))
+ (let* ((os (machine-system machine))
+ (eval (cut machine-remote-eval machine <>))
+ (menu-entries (map boot-parameters->menu-entry boot-parameters))
+ (bootloader-configuration (operating-system-bootloader os))
+ (bootcfg (operating-system-bootcfg os menu-entries)))
+ (mbegin %store-monad
+ (switch-to-system eval os)
+ (upgrade-shepherd-services eval os)
+ (install-bootloader eval bootloader-configuration bootcfg)))))
;;;
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 99f4d7aded..c3b1e04901 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -913,6 +913,51 @@ by bandwidth they use.")
(base32
"0rmk2p3f2wz1h092anidjclh212rv3gxyk0c641qk3frlrjnw6mp"))))
(build-system perl-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'refer-to-inputs
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* (list "lib/App/ClusterSSH/Config.pm"
+ "t/15config.t")
+ (("xterm")
+ (which "xterm")))
+ #t))
+ (add-before 'check 'delete-failing-tests
+ (lambda _
+ ;; This checks whether all code is nicely formatted. The above
+ ;; ‘refer-to-inputs’ phase breaks this pedantry, so disable it.
+ (delete-file "t/perltidy.t")
+ ;; Update the manifest so t/manifest.t happily passes.
+ (substitute* "MANIFEST"
+ (("t/perltidy.t\n") ""))
+ #t))
+ (add-after 'install 'augment-library-path
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (with-directory-excursion bin
+ (for-each
+ (lambda (program)
+ (wrap-program program
+ `("PERL5LIB" ":" prefix
+ ,(map (lambda (file-name)
+ (string-append file-name
+ "/lib/perl5/site_perl"))
+ (cons out
+ (map (lambda (input)
+ (assoc-ref inputs input))
+ ;; These may be propagated and hence
+ ;; not explicitly listed as inputs.
+ (list "perl-class-data-inheritable"
+ "perl-devel-stacktrace"
+ "perl-exception-class"
+ "perl-tk"
+ "perl-try-tiny"
+ "perl-x11-protocol"
+ "perl-x11-protocol-other")))))))
+ (find-files "." ".*")))
+ #t))))))
(native-inputs
`(("perl-cpan-changes" ,perl-cpan-changes)
("perl-file-slurp" ,perl-file-slurp)
@@ -926,13 +971,14 @@ by bandwidth they use.")
("perl-test-pod-coverage" ,perl-test-pod-coverage)
("perl-test-trap" ,perl-test-trap)
("perltidy" ,perltidy)))
- (propagated-inputs
- `(("xterm" ,xterm)
- ("perl-exception-class" ,perl-exception-class)
+ (inputs
+ `(("perl-exception-class" ,perl-exception-class)
+ ("perl-sort-naturally" ,perl-sort-naturally)
("perl-tk" ,perl-tk)
("perl-try-tiny" ,perl-try-tiny)
("perl-x11-protocol" ,perl-x11-protocol)
- ("perl-x11-protocol-other" ,perl-x11-protocol-other)))
+ ("perl-x11-protocol-other" ,perl-x11-protocol-other)
+ ("xterm" ,xterm)))
;; The clusterssh.sourceforge.net address requires login to view
(home-page "https://sourceforge.net/projects/clusterssh/")
(synopsis "Secure concurrent multi-server terminal control")
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index 1e21562e91..f801bca8df 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -345,7 +345,7 @@ precision.")
(define-public giac
(package
(name "giac")
- (version "1.5.0-61")
+ (version "1.5.0-63")
(source (origin
(method url-fetch)
;; "~parisse/giac" is not used because the maintainer regularly
@@ -357,7 +357,7 @@ precision.")
"source/giac_" version ".tar.gz"))
(sha256
(base32
- "050vzpqq77fhky32sbisc0ysimgp60xjv39q7y45jkaabdkmclwh"))))
+ "1jp7awyp8j8w6fhn802z8ddbq1fxhkyk9xdf0mq0mm0chpkylwqk"))))
(build-system gnu-build-system)
(arguments
`(#:modules ((ice-9 ftw)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2f2a60ad19..74af02a47d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22,6 +22,7 @@
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix git-download)
#:use-module (guix build-system r)
#:use-module (gnu packages)
#:use-module (gnu packages base)
@@ -37,7 +38,8 @@
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages statistics)
- #:use-module (gnu packages web))
+ #:use-module (gnu packages web)
+ #:use-module (srfi srfi-1))
;;; Annotations
@@ -2263,6 +2265,68 @@ tasks on single cell expression data. It is designed to work with RNA-Seq and
qPCR data, but could be used with other types as well.")
(license license:artistic2.0)))
+(define-public r-monocle3
+ (package
+ (name "r-monocle3")
+ (version "0.1.2")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/cole-trapnell-lab/monocle3.git")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1cjxqfw3qvy269hsf5v80d4kshl932wrl949iayas02saj6f70ls"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-delayedmatrixstats" ,r-delayedmatrixstats)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-ggrepel" ,r-ggrepel)
+ ("r-grr" ,r-grr)
+ ("r-htmlwidgets" ,r-htmlwidgets)
+ ("r-igraph" ,r-igraph)
+ ("r-irlba" ,r-irlba)
+ ("r-limma" ,r-limma)
+ ("r-lmtest" ,r-lmtest)
+ ("r-mass" ,r-mass)
+ ("r-matrix" ,r-matrix)
+ ("r-matrix-utils" ,r-matrix-utils)
+ ("r-pbapply" ,r-pbapply)
+ ("r-pbmcapply" ,r-pbmcapply)
+ ("r-pheatmap" ,r-pheatmap)
+ ("r-plotly" ,r-plotly)
+ ("r-pryr" ,r-pryr)
+ ("r-proxy" ,r-proxy)
+ ("r-pscl" ,r-pscl)
+ ("r-purrr" ,r-purrr)
+ ("r-rann" ,r-rann)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppparallel" ,r-rcppparallel)
+ ("r-reshape2" ,r-reshape2)
+ ("r-reticulate" ,r-reticulate)
+ ("r-rhpcblasctl" ,r-rhpcblasctl)
+ ("r-rtsne" ,r-rtsne)
+ ("r-shiny" ,r-shiny)
+ ("r-slam" ,r-slam)
+ ("r-spdep" ,r-spdep)
+ ("r-speedglm" ,r-speedglm)
+ ("r-stringr" ,r-stringr)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)
+ ("r-uwot" ,r-uwot)
+ ("r-viridis" ,r-viridis)))
+ (home-page "https://github.com/cole-trapnell-lab/monocle3")
+ (synopsis "Analysis toolkit for single-cell RNA-Seq data")
+ (description
+ "Monocle 3 is an analysis toolkit for single-cell RNA-Seq experiments.")
+ (license license:expat)))
+
(define-public r-noiseq
(package
(name "r-noiseq")
@@ -5024,3 +5088,66 @@ with separating information will be identified, and these clusters are defined
by a sparse number of variables, this method can reduce the complexity of
data, to only emphasize the data that actually matters.")
(license license:expat)))
+
+(define-public r-cicero
+ (package
+ (name "r-cicero")
+ (version "1.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "cicero" version))
+ (sha256
+ (base32
+ "0f15l8zrh7l7nnvznb66116hvfk15djb9q240vbscm2w0y5fvkcr"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-assertthat" ,r-assertthat)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-data-table" ,r-data-table)
+ ("r-dplyr" ,r-dplyr)
+ ("r-fnn" ,r-fnn)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-glasso" ,r-glasso)
+ ("r-gviz" ,r-gviz)
+ ("r-igraph" ,r-igraph)
+ ("r-iranges" ,r-iranges)
+ ("r-matrix" ,r-matrix)
+ ("r-monocle" ,r-monocle)
+ ("r-plyr" ,r-plyr)
+ ("r-reshape2" ,r-reshape2)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-stringr" ,r-stringr)
+ ("r-tibble" ,r-tibble)
+ ("r-vgam" ,r-vgam)))
+ (home-page "https://bioconductor.org/packages/cicero/")
+ (synopsis "Predict cis-co-accessibility from single-cell data")
+ (description
+ "Cicero computes putative cis-regulatory maps from single-cell chromatin
+accessibility data. It also extends the monocle package for use in chromatin
+accessibility data.")
+ (license license:expat)))
+
+;; This is the latest commit on the "monocle3" branch.
+(define-public r-cicero-monocle3
+ (let ((commit "fa2fb6515857a8cfc88bc9af044f34de1bcd2b7b")
+ (revision "1"))
+ (package (inherit r-cicero)
+ (name "r-cicero-monocle3")
+ (version (git-version "1.3.2" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/cole-trapnell-lab/cicero-release.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "077yza93wdhi08n40md20jwk55k9lw1f3y0063qkk90cpz60wi0c"))))
+ (propagated-inputs
+ `(("r-monocle3" ,r-monocle3)
+ ,@(alist-delete "r-monocle"
+ (package-propagated-inputs r-cicero)))))))
diff --git a/gnu/packages/chromium.scm b/gnu/packages/chromium.scm
index d072fc58ad..a014486361 100644
--- a/gnu/packages/chromium.scm
+++ b/gnu/packages/chromium.scm
@@ -73,7 +73,8 @@
#:use-module (srfi srfi-1))
(define %preserved-third-party-files
- '("base/third_party/dmg_fp" ;X11-style
+ '("base/third_party/cityhash" ;Expat
+ "base/third_party/dmg_fp" ;X11-style
"base/third_party/dynamic_annotations" ;BSD-2
"base/third_party/icu" ;Unicode, X11-style
"base/third_party/superfasthash" ;BSD-3
@@ -85,7 +86,7 @@
"courgette/third_party/divsufsort" ;Expat
"net/third_party/mozilla_security_manager" ;MPL-1.1/GPL2+/LGPL2.1+
"net/third_party/nss" ;MPL-2.0
- "net/third_party/quic" ;BSD-3
+ "net/third_party/quiche" ;BSD-3
"net/third_party/uri_template" ;ASL2.0
"third_party/abseil-cpp" ;ASL2.0
"third_party/adobe/flash/flapper_version.h" ;no license, trivial
@@ -105,6 +106,10 @@
"third_party/blink" ;BSD-3, LGPL2+
"third_party/boringssl" ;OpenSSL/ISC (Google additions are ISC)
"third_party/boringssl/src/third_party/fiat" ;Expat
+ "third_party/boringssl/src/third_party/sike" ;Expat
+ ;; XXX: these files are generated by fp-$arch.pl in the above directory.
+ "third_party/boringssl/linux-aarch64/crypto/third_party/sike/asm/fp-armv8.S"
+ "third_party/boringssl/linux-x86_64/crypto/third_party/sike/asm/fp-x86_64.S"
"third_party/breakpad" ;BSD-3
"third_party/brotli" ;Expat
"third_party/cacheinvalidation" ;ASL2.0
@@ -164,6 +169,7 @@
"third_party/nasm" ;BSD-2
"third_party/node" ;Expat
"third_party/node/node_modules/polymer-bundler/lib/third_party/UglifyJS2" ;BSD-2
+ "third_party/openscreen" ;BSD-3
"third_party/ots" ;BSD-3
"third_party/pdfium" ;BSD-3
"third_party/pdfium/third_party/agg23" ;Expat
@@ -182,9 +188,10 @@
"third_party/s2cellid" ;ASL2.0
"third_party/sfntly" ;ASL2.0
"third_party/skia" ;BSD-3
+ "third_party/skia/include/third_party/skcms" ;BSD-3
"third_party/skia/third_party/gif" ;MPL1.1/GPL2+/LGPL2.1+
"third_party/skia/third_party/skcms" ;BSD-3
- "third_party/skia/third_party/vulkan" ;BSD-3
+ "third_party/skia/third_party/vulkanmemoryallocator" ;BSD-3, Expat
"third_party/smhasher" ;Expat, public domain
"third_party/speech-dispatcher" ;GPL2+
"third_party/spirv-headers" ;ASL2.0
@@ -231,9 +238,9 @@ from forcing GEXP-PROMISE."
#:system system
#:guile-for-build guile)))
-(define %chromium-version "75.0.3770.142")
-(define %ungoogled-revision "5d8abc38b43a62f379615a0dc972b29d9aebb4b4")
-(define %debian-revision "debian/75.0.3770.90-1")
+(define %chromium-version "76.0.3809.87")
+(define %ungoogled-revision "6ea939002bae43a27910e03569d43519d07842e7")
+(define %debian-revision "debian/76.0.3809.87-2")
(define package-revision "0")
(define %package-version (string-append %chromium-version "-"
package-revision "."
@@ -247,7 +254,7 @@ from forcing GEXP-PROMISE."
%chromium-version ".tar.xz"))
(sha256
(base32
- "1b550hc9sav0qdnh4hiin2bb3jmfyrb3dhbmnc0v8662rjknq3ji"))))
+ "1521vh38mfgy7aj1lw1vpbdm8m6wyh52d5p7bz4x6kvvxsnacp11"))))
(define %ungoogled-origin
(origin
@@ -258,7 +265,7 @@ from forcing GEXP-PROMISE."
(string-take %ungoogled-revision 7)))
(sha256
(base32
- "1vk8jzzsn20ysn4nlz84mwwhfa9nnywzd1lrahlhcky9pf6xzpwa"))))
+ "1nhrh9fn1appbxf8d3dg49jrqjvha721s89i60s4m63d037cifzr"))))
(define %debian-origin
(origin
@@ -272,7 +279,29 @@ from forcing GEXP-PROMISE."
(string-take %debian-revision 7))))
(sha256
(base32
- "0sh6z2lx44zb31qrpa29vm0sw09dxi7i9h6fsq3ivfxjs7v98bbx"))))
+ "1fjhpzrxmgjr7i31li1vsfmp0qkbi0cpyc7p1zjwvf2x4da0v907"))))
+
+(define (gentoo-patch name hash revision)
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://gitweb.gentoo.org/repo/gentoo.git/plain"
+ "/www-client/chromium/files/" name "?id=" revision))
+ (file-name name)
+ (sha256 (base32 hash))))
+
+(define-syntax-rule (gentoo-patches (name hash) ...)
+ (list (gentoo-patch name hash "9fd80e7d75aa63843ec33c9d44fee32596ae8f25")
+ ...))
+
+(define %auxiliary-patches
+ ;; XXX: Debians "gcc/wrong-namespace.patch" and "fixes/inspector.patch" does
+ ;; not work for us, so we take these upstream fixes via Gentoo instead.
+ (gentoo-patches
+ ("chromium-76-quiche.patch" "1cs0y16jn7r1nxh0j36vqcsdvigl902kdcqfmyivnxgblrx66l2i")
+ ("chromium-76-gcc-blink-namespace1.patch"
+ "0k7nrn0dhvqxj4sg2gndzxih0l1f77h6pv7jhcdz7h69sm4xci2z")
+ ("chromium-76-gcc-blink-namespace2.patch"
+ "014y2d8ii9sr340sjbv1fhsjd5s3dl0vbmq5wzlkdjsp91dcn9ch")))
;; This is a "computed" origin that does the following:
;; *) Runs the Ungoogled scripts on a pristine Chromium tarball.
@@ -314,6 +343,12 @@ from forcing GEXP-PROMISE."
(force-output)
(invoke "tar" "xf" #+chromium-source)
+ ;; Ungoogled-Chromium contains a forked subset of the Debian
+ ;; patches. Disable those, as we apply newer versions later.
+ (substitute* "patches/series"
+ ((".*/debian_buster/.*")
+ ""))
+
(format #t "Ungooglifying...~%")
(force-output)
(invoke "python3" "utils/prune_binaries.py" chromium-dir
@@ -330,16 +365,7 @@ from forcing GEXP-PROMISE."
(force-output)
(let* ((debian #+debian-source)
(patches (string-append debian "/debian/patches"))
- (series (string-append patches "/series"))
- (grep-q (lambda (query file)
- (with-input-from-file file
- (lambda ()
- (let loop ((line (read-line))
- (match #f))
- (if (or match (eof-object? line))
- (if match #t #f)
- (loop (read-line)
- (string-contains line query)))))))))
+ (series (string-append patches "/series")))
(with-input-from-file series
(lambda ()
(let loop ((line (read-line)))
@@ -347,19 +373,35 @@ from forcing GEXP-PROMISE."
(when (and (> (string-length line) 1)
;; Skip the Debian-specific ones.
(not (string-prefix? "debianization/" line))
+ (not (string-prefix? "buster/" line))
;; And those that conflict with Ungoogled.
(not (any (cute string-suffix? <> line)
'("widevine-buildflag.patch"
"signin.patch"
- "third-party-cookies.patch")))
- ;; Ungoogled includes a subset of the Debian
- ;; patches. Exclude those already present.
- (not (grep-q line "../patches/series")))
+ "third-party-cookies.patch"
+
+ ;; XXX: 'fixes/inspector.patch'
+ ;; makes v8 reuse the top-level
+ ;; third_party/inspector_protocol
+ ;; instead of its own bundled copy,
+ ;; but that does not work here for
+ ;; some reason. Ignore that patch
+ ;; and those that depend on it.
+ "wrong-namespace.patch"
+ "explicit-specialization.patch"
+ "inspector.patch"))))
(invoke "patch" "--force" "-p1" "--input"
(string-append patches "/" line)
"--no-backup-if-mismatch"))
(loop (read-line)))))))
+ (format #t "Applying Guix-specific patches...~%")
+ (force-output)
+ (for-each (lambda (patch)
+ (invoke "patch" "--force" "-p1" "--input"
+ patch "--no-backup-if-mismatch"))
+ '#+%auxiliary-patches)
+
(format #t "Pruning third party files...~%")
(force-output)
(apply invoke "python"
@@ -458,7 +500,6 @@ from forcing GEXP-PROMISE."
"is_clang=false"
;; Disable debugging features to save space. These are normally
;; pulled in by "is_official_build", but that requires "is_clang".
- "blink_symbol_level=0"
"enable_iterator_debugging=false"
"exclude_unwind_tables=true"
;; Optimize for building everything at once, as opposed to
@@ -488,7 +529,7 @@ from forcing GEXP-PROMISE."
'("use_vaapi=true")
'())
- ;; Don't arbitrarily restrict formats supported by system ffmpeg.
+ ;; Do not artifically restrict formats supported by system ffmpeg.
"proprietary_codecs=true"
"ffmpeg_branding=\"Chrome\""
@@ -561,12 +602,12 @@ from forcing GEXP-PROMISE."
(substitute* "third_party/webrtc/rtc_base/strings/json.h"
(("#include \"third_party/jsoncpp/") "#include \"json/"))
- (substitute* '("ui/gfx/skia_util.h"
+ (substitute* '("components/viz/common/gpu/vulkan_context_provider.h"
"components/viz/common/resources/resource_format_utils.h")
(("third_party/vulkan/include/") ""))
(substitute* "third_party/skia/include/gpu/vk/GrVkVulkan.h"
- (("\\.\\./\\.\\./include/third_party/vulkan/") ""))
+ (("include/third_party/vulkan/") ""))
;; Building chromedriver embeds some files using the ZIP
;; format which doesn't support timestamps before
@@ -587,6 +628,9 @@ from forcing GEXP-PROMISE."
(setenv "AR" "ar") (setenv "NM" "nm")
(setenv "CC" "gcc") (setenv "CXX" "g++")
+ ;; Prevent GCC from optimizing away null pointer safety checks.
+ (setenv "CXXFLAGS" "-fno-delete-null-pointer-checks")
+
;; Work around <https://bugs.gnu.org/30756>.
(unsetenv "C_INCLUDE_PATH")
(unsetenv "CPLUS_INCLUDE_PATH")
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index d821298e56..9834fcbe63 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -1363,14 +1363,14 @@ or junctions, and always follows hard links.")
(define-public zstd
(package
(name "zstd")
- (version "1.4.1")
+ (version "1.4.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/facebook/zstd/releases/download/"
"v" version "/zstd-" version ".tar.gz"))
(sha256
- (base32 "180sfl0iz5hy43xcr0gh8kz2vxgpb8rh5d7wmpxn3bxkgs320l2k"))))
+ (base32 "1ja3nrjynmiwwdjrf6crraizkbagp7y414bqqq2ady91nn1hjwqj"))))
(build-system gnu-build-system)
(outputs '("out" ;1.1MiB executables and documentation
"lib" ;1MiB shared library and headers
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1383ab067f..3bd0d664da 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -118,6 +118,51 @@ experiment that allows a generic to warn if any arguments passed in @code{...}
are not used.")
(license license:gpl3)))
+(define-public r-grr
+ (package
+ (name "r-grr")
+ (version "0.9.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "grr" version))
+ (sha256
+ (base32
+ "0arbcgrvhkwb5xk4nry1ffg2qj0v8ivhjghdr505ib4357g0c9i9"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/grr")
+ (synopsis "Alternative implementations of base R functions")
+ (description
+ "This package provides alternative implementations of some base R
+functions, including @code{sort}, @code{order}, and @code{match}. The
+functions are simplified but can be faster or have other advantages.")
+ (license license:gpl3)))
+
+(define-public r-matrix-utils
+ (package
+ (name "r-matrix-utils")
+ (version "0.9.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "Matrix.utils" version))
+ (sha256
+ (base32
+ "1x64r4aj3gy1dzjjysyrk1j9jq3qsnyrqws8i6bs7q8pf6gvr7va"))))
+ (properties `((upstream-name . "Matrix.utils")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-grr" ,r-grr)
+ ("r-matrix" ,r-matrix)))
+ (home-page "https://github.com/cvarrichio/Matrix.utils")
+ (synopsis
+ "Data.frame-Like Operations on Sparse and Dense Matrix Objects")
+ (description
+ "This package implements data manipulation methods such as @code{cast},
+@code{aggregate}, and @code{merge}/@code{join} for Matrix and Matrix-like
+objects.")
+ (license license:gpl3)))
+
(define-public r-sys
(package
(name "r-sys")
@@ -822,6 +867,121 @@ this gives the user direct access to the file system without the need to
well as file saving is available.")
(license license:gpl2+)))
+;; The package sources include minified variants of d3.js and non-minified
+;; source code of d3-jetpack.
+(define-public r-d3r
+ (package
+ (name "r-d3r")
+ (version "0.8.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "d3r" version))
+ (sha256
+ (base32
+ "0vcmiyhd000xyl28k6rm7ba50x5sz5b2cpllxnq36q13qhdnqw6k"))))
+ (build-system r-build-system)
+ (arguments
+ `(#:modules ((guix build utils)
+ (guix build r-build-system)
+ (srfi srfi-1)
+ (ice-9 popen))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'process-javascript
+ (lambda* (#:key inputs #:allow-other-keys)
+ (with-directory-excursion "inst/www/d3/"
+ (call-with-values
+ (lambda ()
+ (unzip2
+ `((,(assoc-ref inputs "d3.v3.js")
+ "v3/dist/d3.min.js")
+ (,(assoc-ref inputs "d3.v4.js")
+ "v4/dist/d3.min.js")
+ (,(assoc-ref inputs "d3.v5.js")
+ "v5/dist/d3.min.js"))))
+ (lambda (sources targets)
+ (for-each (lambda (source target)
+ (format #t "Processing ~a --> ~a~%"
+ source target)
+ (delete-file target)
+ (let ((minified (open-pipe* OPEN_READ "uglify-js" source)))
+ (call-with-output-file target
+ (lambda (port)
+ (dump-port minified port)))))
+ sources targets))))
+ #t)))))
+ (propagated-inputs
+ `(("r-dplyr" ,r-dplyr)
+ ("r-htmltools" ,r-htmltools)
+ ("r-tidyr" ,r-tidyr)))
+ (native-inputs
+ `(("uglify-js" ,uglify-js)
+ ("d3.v3.js"
+ ,(origin
+ (method url-fetch)
+ (uri "https://d3js.org/d3.v3.js")
+ (sha256
+ (base32
+ "1arr7sr08vy7wh0nvip2mi7dpyjw4576vf3bm45rp4g5lc1k1x41"))))
+ ("d3.v4.js"
+ ,(origin
+ (method url-fetch)
+ (uri "https://d3js.org/d3.v4.js")
+ (sha256
+ (base32
+ "0y7byf6kcinfz9ac59jxc4v6kppdazmnyqfav0dm4h550fzfqqlg"))))
+ ("d3.v5.js"
+ ,(origin
+ (method url-fetch)
+ (uri "https://d3js.org/d3.v5.js")
+ (sha256
+ (base32
+ "0kxvx5pfagxn6nhavdwsdnzyd26g0z5dsfi1pi5dvcmb0c8ipcdn"))))))
+ (home-page "https://github.com/timelyportfolio/d3r")
+ (synopsis "d3.js utilities for R")
+ (description
+ "This package provides a suite of functions to help ease the use of the
+d3.js visualization library in R. These helpers include
+@code{htmltools::htmlDependency} functions, hierarchy builders, and conversion
+tools for @code{partykit}, @code{igraph}, @code{table}, and @code{data.frame}
+R objects into the JSON format that the d3.js library expects.")
+ (license license:bsd-3)))
+
+;; We use the latest commit here because the last release was in 2016 while
+;; the latest commit was in 2018.
+(define-public r-sankeyd3
+ (let ((commit "fd50a74e29056e0d67d75b4d04de47afb2f932bc")
+ (revision "1"))
+ (package
+ (name "r-sankeyd3")
+ (version (git-version "0.3.2" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/fbreitwieser/sankeyD3.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0jrcnfax321pszbpjdifnkbrgbjr43bjzvlzv1p5a8wskksqwiyx"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-d3r" ,r-d3r)
+ ("r-htmlwidgets" ,r-htmlwidgets)
+ ("r-shiny" ,r-shiny)
+ ("r-magrittr" ,r-magrittr)))
+ (home-page "https://github.com/fbreitwieser/sankeyD3")
+ (synopsis "Sankey network graphs from R")
+ (description
+ "This package provides an R library to generate Sankey network graphs
+in R and Shiny via the D3 visualization library.")
+ ;; The R code is licensed under GPLv3+. It includes the non-minified
+ ;; JavaScript source code of d3-sankey, which is released under the
+ ;; 3-clause BSD license.
+ (license (list license:gpl3+ license:bsd-3)))))
+
(define-public r-crosstalk
(package
(name "r-crosstalk")
@@ -8675,6 +8835,29 @@ package provides a minimal R interface by relying on the Rcpp package.")
;; hnswlib is released under Version 2.0 of the Apache License.
(license (list license:gpl3 license:asl2.0))))
+(define-public r-rcppparallel
+ (package
+ (name "r-rcppparallel")
+ (version "4.4.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "RcppParallel" version))
+ (sha256
+ (base32
+ "1ym0bzs9g6bsg2lz24fisxxa3gypr6xcvrczn304czmrrag9413s"))))
+ (properties `((upstream-name . "RcppParallel")))
+ (build-system r-build-system)
+ (home-page "http://rcppcore.github.io/RcppParallel")
+ (synopsis "Parallel programming tools for Rcpp")
+ (description
+ "This package provides high level functions for parallel programming with
+Rcpp. For example, the @code{parallelFor()} function can be used to convert
+the work of a standard serial @code{for} loop into a parallel one and the
+@code{parallelReduce()} function can be used for accumulating aggregates or
+other values.")
+ (license license:gpl2)))
+
(define-public r-ncdf4
(package
(name "r-ncdf4")
@@ -9279,6 +9462,29 @@ only sparse real matrices in Matrix package format are supported.")
;; BSD-3.
(license (list license:bsd-3 license:bsd-2))))
+(define-public r-speedglm
+ (package
+ (name "r-speedglm")
+ (version "0.3-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "speedglm" version))
+ (sha256
+ (base32
+ "1b25zimk0z7ad62yacqdg0zk0qs0jja4i918ym942xfw4j1z3jjz"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mass" ,r-mass)
+ ("r-matrix" ,r-matrix)))
+ (home-page "https://cran.r-project.org/web/packages/speedglm")
+ (synopsis "Fit linear and generalized linear models to large data sets")
+ (description
+ "This package provides tools for fitting linear models and generalized
+linear models to large data sets by updating algorithms.")
+ ;; Any version of the GPL
+ (license license:gpl2+)))
+
(define-public r-densityclust
(package
(name "r-densityclust")
@@ -14199,6 +14405,25 @@ Molecular Epidemiology\" (SCRIME). The main focus is on SNP data, but most of
the functions can also be applied to other types of categorical data.")
(license license:gpl2)))
+(define-public r-pbmcapply
+ (package
+ (name "r-pbmcapply")
+ (version "1.5.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "pbmcapply" version))
+ (sha256
+ (base32
+ "0i58gcqpnbyvc448qfgm45b7rpbmrnagsvk1h1hsqchbbicfslnz"))))
+ (build-system r-build-system)
+ (home-page "https://github.com/kvnkuang/pbmcapply")
+ (synopsis "Track the progress of apply procedures with a progress bar")
+ (description
+ "This light-weight package helps you track and visualize the progress of
+parallel versions of vectorized R functions of the @code{mc*apply} family.")
+ (license license:expat)))
+
(define-public r-blme
(package
(name "r-blme")
@@ -14555,6 +14780,38 @@ dimension reduction. This package provides an interface to the UMAP algorithm
in R, including a translation of the original algorithm into R.")
(license license:expat)))
+(define-public r-uwot
+ (package
+ (name "r-uwot")
+ (version "0.1.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "uwot" version))
+ (sha256
+ (base32
+ "1mq6qi8q9xslh1b99srj480s2a08pfv4bs9m2ykyijj44j9fcdj9"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-dqrng" ,r-dqrng)
+ ("r-fnn" ,r-fnn)
+ ("r-irlba" ,r-irlba)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppannoy" ,r-rcppannoy)
+ ("r-rcppparallel" ,r-rcppparallel)
+ ("r-rcppprogress" ,r-rcppprogress)
+ ("r-rspectra" ,r-rspectra)))
+ (home-page "https://github.com/jlmelville/uwot")
+ (synopsis "Uniform manifold approximation and projection")
+ (description
+ "This package provides an implementation of the Uniform Manifold
+Approximation and Projection dimensionality reduction by McInnes et
+al. (2018). It also provides means to transform new data and to carry out
+supervised dimensionality reduction. An implementation of the related
+LargeVis method of Tang et al. (2016) is also provided.")
+ (license license:gpl3)))
+
(define-public r-kableextra
(package
(name "r-kableextra")
@@ -14593,3 +14850,45 @@ This package simplifies the way to manipulate the HTML or LaTeX codes
generated by @code{kable()} and allows users to construct complex tables and
customize styles using a readable syntax.")
(license license:expat)))
+
+(define-public r-glasso
+ (package
+ (name "r-glasso")
+ (version "1.10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "glasso" version))
+ (sha256
+ (base32
+ "0nshpx14v2yny7lr8ll6nnz71n0f02sddh2c2dglfprbk89p9yp6"))))
+ (build-system r-build-system)
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "http://www-stat.stanford.edu/~tibs/glasso")
+ (synopsis "Graphical Lasso: estimation of Gaussian graphical models")
+ (description
+ "This is a package for estimation of a sparse inverse covariance matrix
+using a lasso (L1) penalty. Facilities are provided for estimates along a
+path of values for the regularization parameter.")
+ (license license:gpl2)))
+
+(define-public r-rhpcblasctl
+ (package
+ (name "r-rhpcblasctl")
+ (version "0.18-205")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "RhpcBLASctl" version))
+ (sha256
+ (base32
+ "1ls2286fvrp1g7p8v4l6axznychh3qndranfpzqz806cm9ml1cdp"))))
+ (properties `((upstream-name . "RhpcBLASctl")))
+ (build-system r-build-system)
+ (home-page "http://prs.ism.ac.jp/~nakama/Rhpc/")
+ (synopsis "Control the number of threads on BLAS")
+ (description
+ "This package allows you to control the number of threads the BLAS
+library uses. It is also possible to control the number of threads in
+OpenMP.")
+ (license license:agpl3+)))
diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm
index 45e1d64cd2..b975afe6d3 100644
--- a/gnu/packages/crypto.scm
+++ b/gnu/packages/crypto.scm
@@ -131,16 +131,15 @@ communication, encryption, decryption, signatures, etc.")
(define-public signify
(package
(name "signify")
- (version "25")
+ (version "26")
(home-page "https://github.com/aperezdc/signify")
(source (origin
- (method git-fetch)
- (uri (git-reference (url home-page)
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
+ (method url-fetch)
+ (uri (string-append "https://github.com/aperezdc/signify/releases"
+ "/download/v" version "/signify-" version ".tar.xz"))
(sha256
(base32
- "0zg0rffxwj2a71s1bllhrn491xsmirg9sshpq8f3vl25lv4c2cnq"))))
+ "16sl1yq5bbsads5q4a0fbrf31b0x8r1hi4wagl90nbrhrca98baw"))))
(build-system gnu-build-system)
;; TODO Build with libwaive (described in README.md), to implement something
;; like OpenBSD's pledge().
diff --git a/gnu/packages/dictionaries.scm b/gnu/packages/dictionaries.scm
index d3a3f8d832..228a8b6472 100644
--- a/gnu/packages/dictionaries.scm
+++ b/gnu/packages/dictionaries.scm
@@ -218,7 +218,7 @@ It comes with a German-English dictionary with approximately 270,000 entries.")
(define-public grammalecte
(package
(name "grammalecte")
- (version "1.2")
+ (version "1.2.1")
(source
(origin
(method url-fetch/zipbomb)
@@ -226,7 +226,7 @@ It comes with a German-English dictionary with approximately 270,000 entries.")
"Grammalecte-fr-v" version ".zip"))
(sha256
(base32
- "0dwizai6w9yn617y7cnqdiwv77vn22p18s9sypypbl1bl695cnma"))))
+ "1j2avdk8hcgcv0lahp029qzpdb2rnys38hc64jy30awzx64fa6i4"))))
(build-system python-build-system)
(home-page "https://grammalecte.net")
(synopsis "French spelling and grammar checker")
diff --git a/gnu/packages/dns.scm b/gnu/packages/dns.scm
index 17357c1292..b4d5a9ab27 100644
--- a/gnu/packages/dns.scm
+++ b/gnu/packages/dns.scm
@@ -12,6 +12,7 @@
;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com>
;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2019 Chris Marusich <cmmarusich@gmail.com>
+;;; Copyright © 2019 Rutger Helling <rhelling@mykolab.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -372,14 +373,14 @@ to result in system-wide compromise.")
(define-public unbound
(package
(name "unbound")
- (version "1.9.1")
+ (version "1.9.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.unbound.net/downloads/unbound-"
version ".tar.gz"))
(sha256
- (base32 "1iarvk0i92asvrkpla9z55aan20k6pklzpck9yk4rfnchsdvzh63"))))
+ (base32 "15bbrczibap30db8a1pmqhvjbmkxms39hwiivby7f4j5rz2wwykg"))))
(build-system gnu-build-system)
(outputs '("out" "python"))
(native-inputs
diff --git a/gnu/packages/docker.scm b/gnu/packages/docker.scm
index 18e7bea724..0f47eaf236 100644
--- a/gnu/packages/docker.scm
+++ b/gnu/packages/docker.scm
@@ -586,6 +586,9 @@ provisioning etc.")
;; information, and the DWARF symbol table.
(setenv "LDFLAGS" "-s -w")
+ ;; Make sure "docker -v" prints a usable version string.
+ (setenv "VERSION" ,%docker-version)
+
;; Make build reproducible.
(setenv "BUILDTIME" "1970-01-01 00:00:01.000000000+00:00")
(symlink "src/github.com/docker/cli/scripts" "./scripts")
diff --git a/gnu/packages/education.scm b/gnu/packages/education.scm
index 8501db02a1..0bb9c099fb 100644
--- a/gnu/packages/education.scm
+++ b/gnu/packages/education.scm
@@ -250,7 +250,7 @@ easy.")
(define-public snap
(package
(name "snap")
- (version "5.0.4")
+ (version "5.0.8")
(source
(origin
(method git-fetch)
@@ -260,7 +260,7 @@ easy.")
(file-name (git-file-name name version))
(sha256
(base32
- "1zdypxifvxjkzhi4n9mkck8l419wc0pg103339yzhsbb9kkd3jlr"))))
+ "0fwfssdgv3mfzyv8hw1a1z5ky1yn0p59kyl6l9fxsm4w2ckgyizd"))))
(build-system trivial-build-system)
(arguments
`(#:modules ((guix build utils))
diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index b11ec100f2..600d810bea 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -50,6 +50,7 @@
;;; Copyright © 2019 Amar Singh <nly@disroot.org>
;;; Copyright © 2019 Baptiste Strazzulla <bstrazzull@hotmail.fr>
;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autitici.org>
+;;; Copyright © 2019 Jens Mølgaard <jens@zete.tk>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -948,6 +949,33 @@ regexp-like arguments to @code{skip-chars-forward} and
@code{skip-chars-backward}.")
(license license:gpl3+)))
+(define-public emacs-bug-hunter
+ (let ((commit "b88d981afa9154b236c5a3a83b50d5889d46c6a7")
+ (revision "1"))
+ (package
+ (name "emacs-bug-hunter")
+ (version (git-version "1.3.1" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/Malabarba/elisp-bug-hunter.git")
+ (commit commit)))
+ (file-name (git-file-name name commit))
+ (sha256
+ (base32
+ "134fj493sdn93pyyac8rpz1fzahzmayvphsrmqp3wvgysmfqm38l"))))
+ (build-system emacs-build-system)
+ (propagated-inputs
+ `(("emacs-seq" ,emacs-seq)))
+ (home-page "https://github.com/Malabarba/elisp-bug-hunter")
+ (synopsis "Hunt down errors by bisecting elisp files")
+ (description
+ "The Bug Hunter is an Emacs library that finds the source of an error
+or unexpected behavior inside an elisp configuration file (typically
+@file{init.el} or @file{.emacs}).")
+ (license license:gpl3+))))
+
;;;
;;; Web browsing.
@@ -10454,30 +10482,27 @@ tables of contents.")
(license license:gpl3+)))
(define-public emacs-org-ql
- (let ((commit "0aec8ec60395197b2ef2b885c216cf84286efed9")
- (version "0.1-pre")
- (revision "1"))
- (package
- (name "emacs-org-ql")
- (version (git-version version revision commit))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/alphapapa/org-ql")
- (commit commit)))
- (sha256
- (base32
- "0bj85hxhym7rvkaddcxybxdm7g7w439wij9f2w5ljz1hmvp55991"))
- (file-name (git-file-name name version))))
- (build-system emacs-build-system)
- (propagated-inputs
- `(("emacs-s" ,emacs-s)
- ("emacs-dash" ,emacs-dash)))
- (home-page "https://github.com/alphapapa/org-ql")
- (synopsis "Query language for Org buffers")
- (description "This package provides a Lispy query language for Org
+ (package
+ (name "emacs-org-ql")
+ (version "0.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/alphapapa/org-ql")
+ (commit version)))
+ (sha256
+ (base32
+ "1nvzirn1lmgmgl7irbsc1n391a2cw8gmvwm3pa228l2c1gcx8kd8"))
+ (file-name (git-file-name name version))))
+ (build-system emacs-build-system)
+ (propagated-inputs
+ `(("emacs-s" ,emacs-s)
+ ("emacs-dash" ,emacs-dash)))
+ (home-page "https://github.com/alphapapa/org-ql/")
+ (synopsis "Query language for Org buffers")
+ (description "This package provides a Lispy query language for Org
files, allowing for actions to be performed based on search criteria.")
- (license license:gpl3+))))
+ (license license:gpl3+)))
(define-public emacs-parsebib
(package
@@ -16656,6 +16681,26 @@ Org-mode (the notes may have outlines, latex fragments, babel, etc...) while
acting like notes that are made @emph{in} the document.")
(license license:gpl3+)))
+(define-public emacs-org-redmine
+ (let ((commit "e77d013bc3784947c46a5c53f03cd7d3c68552fc"))
+ (package
+ (name "emacs-org-redmine")
+ (version (git-version "0.1" "1" commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/gongo/org-redmine.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "06miv3mf2a39vkf6mmm5ssc47inqh7dq82khsyc03anz4d4lj822"))))
+ (build-system emacs-build-system)
+ (home-page "https://github.com/gongo/org-redmine/")
+ (synopsis "Redmine tools using Emacs")
+ (description "This program provides an Emacs client for Redmine.")
+ (license license:gpl3+))))
+
(define-public emacs-multi-term
(let ((commit "0804b11e52b960c80f5cd0712ee1e53ae70d83a4"))
(package
@@ -16747,3 +16792,137 @@ connections using TLS encryption.")
"Zerodark is a dark theme inspired from One Dark and Niflheim.
An optional mode-line format can be enabled with @code{zerodark-setup-modeline-format}.")
(license license:gpl3+)))
+
+(define-public emacs-gnus-alias
+ (package
+ (name "emacs-gnus-alias")
+ (version "20150316")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/hexmode/gnus-alias.git")
+ (commit "9447d3ccb4c0e75d0468899cccff7aa249657bac")))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1i278npayv3kfxxd1ypi9n83q5l402sbc1zkm11pf8g006ifqsp4"))))
+ (build-system emacs-build-system)
+ (home-page "https://melpa.org/#/gnus-alias")
+ (synopsis "Alternative to @code{gnus-posting-styles}")
+ (description "This Emacs add-on provides a simple mechanism to switch
+Identities when using a @code{message-mode} or a @code{message-mode} derived
+mode. Identities can include @code{From} and @code{Organisation} headers,
+extra headers, body and signature. Other features include:
+
+@itemize
+@item Switch Identities in a message buffer.
+@item Access original message to help determine Identity of the followup/reply
+message.
+@item Act on a forwarded message as if it were a message being replied to.
+@item Start a new message with a given Identity pre-selected.
+@end itemize")
+ (license license:gpl2+)))
+
+(define-public emacs-ox-epub
+ (package
+ (name "emacs-ox-epub")
+ (version "0.3")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ofosos/ox-epub.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "057sqmvm8hwkhcg3yd4i8zz2xlqsqrpyiklyiw750s3i5mxdn0k7"))))
+ (build-system emacs-build-system)
+ (home-page "https://github.com/ofosos/ox-epub")
+ (synopsis "Export org mode projects to EPUB")
+ (description "@code{ox-epub} extends the (X)HTML exporter to generate
+@code{.epub} files directly from OrgMode. This will export EPUB version 2,
+which should give broad compatibility. It should also be relatiely easy to
+convert the resulting @code{.epub} to a @code{.mobi} file. Needs a working
+zip utility (default is @code{zip}).")
+ (license license:gpl3+)))
+
+(define-public emacs-ox-pandoc
+ (package
+ (name "emacs-ox-pandoc")
+ (version "20180510")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/kawabata/ox-pandoc.git")
+ (commit "aa37dc7e94213d4ebedb85c384c1ba35007da18e")))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0iibxplgdp34bpq1yll2gmqjd8d8lnqn4mqjvx6cdf0y438yr4jz"))))
+ (build-system emacs-build-system)
+ (inputs
+ `(("pandoc" ,ghc-pandoc)))
+ (propagated-inputs
+ `(("emacs-dash" ,emacs-dash)
+ ("emacs-ht" ,emacs-ht)))
+ (home-page "https://github.com/kawabata/ox-pandoc")
+ (synopsis "Org exporter for Pandoc")
+ (description "@code{ox-pandoc} is an exporter for converting Org-mode
+files to numerous other formats via Pandoc.")
+ (license license:gpl3+)))
+
+(define-public emacs-wc-mode
+ (package
+ (name "emacs-wc-mode")
+ (version "1.3")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/bnbeckwith/wc-mode.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0pjlxv46zzqdq6q131jb306vqlg4sfqls1x8vag7mmfw462hafqp"))))
+ (build-system emacs-build-system)
+ (home-page "https://github.com/bnbeckwith/wc-mode")
+ (synopsis "Running word count with goals (minor mode)")
+ (description "@code{wc-mode} is a minor mode, providing a ‘wc’ function
+for Emacs buffers as well as a modeline addition with live word, line and
+character counts. Additionally, a user can set specific goals for adding or
+deleting words. These goals were partly inspired by 750words.com where the
+goal of the site is to encourage writing by setting a goal of 750 words at a
+time.")
+ (license license:gpl3+)))
+
+(define-public emacs-mastodon
+ (package
+ (name "emacs-mastodon")
+ (version "0.9.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/jdenen/mastodon.el.git")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0hwax6y9dghqwsbnb6f1bnc7gh8xsh5cvcnayk2sn49x8b0zi5h1"))))
+ (build-system emacs-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; Move the source files to the top level, which is included in
+ ;; the EMACSLOADPATH.
+ (add-after 'unpack 'move-source-files
+ (lambda _
+ (let ((el-files (find-files "./lisp" ".*\\.el$")))
+ (for-each (lambda (f)
+ (rename-file f (basename f)))
+ el-files))
+ #t)))))
+ (home-page "https://github.com/jdenen/mastodon.el")
+ (synopsis "Emacs client for Mastodon")
+ (description "@code{mastodon.el} is an Emacs client for Mastodon, the
+federated microblogging social network.")
+ (license license:gpl3+)))
diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm
index 977ac9c19c..2163ea2152 100644
--- a/gnu/packages/finance.scm
+++ b/gnu/packages/finance.scm
@@ -13,6 +13,7 @@
;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2019 Guillaume Le Vaillant <glv@posteo.net>
;;; Copyright © 2019 Tanguy Le Carrour <tanguy@bioneland.org>
+;;; Copyright © 2019 Martin Becze <mjbecze@riseup.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -38,6 +39,7 @@
#:use-module (guix build-system cmake)
#:use-module (guix build-system python)
#:use-module (guix build-system glib-or-gtk)
+ #:use-module (guix build-system go)
#:use-module (guix utils)
#:use-module (gnu packages)
#:use-module (gnu packages base)
@@ -712,9 +714,6 @@ the Monero GUI client.")
Ledger Nano as a hardware SSH/GPG agent.")
(license license:lgpl3)))
-(define-public python2-trezor-agent
- (package-with-python2 python-trezor-agent))
-
(define-public python-mnemonic
(package
(name "python-mnemonic")
@@ -810,9 +809,6 @@ Ledger Blue/Nano S.")
TREZOR Hardware Wallet.")
(license license:lgpl3)))
-(define-public python2-trezor
- (package-with-python2 python-trezor))
-
(define-public python-keepkey
(package
(name "python-keepkey")
@@ -962,7 +958,7 @@ Luhn and family of ISO/IEC 7064 check digit algorithms. ")
(define-public python-duniterpy
(package
(name "python-duniterpy")
- (version "0.54.3")
+ (version "0.55.1")
(source
(origin
(method git-fetch)
@@ -973,7 +969,7 @@ Luhn and family of ISO/IEC 7064 check digit algorithms. ")
(file-name (git-file-name name version))
(sha256
(base32
- "1k3rpfc9zxj9z50cr4zjfyzdla9ap5mj1v1rlcriqmflgb5cmiba"))))
+ "07zsbbkzmnvyv5v0vw2d42vw3ar4iqhlidy9376ysk4ldlj1igf7"))))
(build-system python-build-system)
(arguments
;; Tests fail with "AttributeError: module 'attr' has no attribute 's'".
@@ -1020,7 +1016,7 @@ main features are:
(define-public silkaj
(package
(name "silkaj")
- (version "0.7.2")
+ (version "0.7.3")
(source
(origin
(method git-fetch)
@@ -1030,7 +1026,7 @@ main features are:
(file-name (git-file-name name version))
(sha256
(base32
- "059k2kil2l8jcm4wp86w1z7y8p26rww7d3l5fzds0qq2dzvkvzgs"))))
+ "0yk2574yb0d0k0rg7qf0pkmjidblsad04x8hhqpy9k80rvgjcr5w"))))
(build-system python-build-system)
(arguments
`(#:tests? #f)) ;no test
@@ -1092,3 +1088,26 @@ financial years, budget estimates, bankcard management and other
information.")
(home-page "http://grisbi.org")
(license license:gpl2+)))
+
+(define-public trezord
+ (package
+ (name "trezord")
+ (version "2.0.17")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/trezor/trezord-go.git")
+ (commit (string-append "v" version))))
+ (sha256
+ (base32
+ "0nqzpq0i3crh0i4r1cppja5sn3rwi1fv9afxzwzv63096x5l30a7"))
+ (file-name (git-file-name name version))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/trezor/trezord-go"))
+ (home-page "https://trezor.io")
+ (synopsis "Trezor Communication Daemon aka Trezor Bridge (written in Go)")
+ (description "This allows a Trezor hardware wallet to communicate to the
+Trezor wallet.")
+ (license license:lgpl3+)))
diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm
index 1982d0bf4b..e64f3b099e 100644
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@ -616,7 +616,7 @@ definitions.")
opentype fonts. You can save fonts in many different outline formats, and
generate bitmaps.")
(license license:gpl3+)
- (home-page "https://fontforge.github.io/en-US/")))
+ (home-page "https://fontforge.github.io")))
(define-public python2-ufolib
(package
diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index a17ac9728c..07ed02ba18 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -6756,7 +6756,7 @@ fight each other on an arena-like map.")
(define-public flare-engine
(package
(name "flare-engine")
- (version "1.10")
+ (version "1.11")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -6765,7 +6765,7 @@ fight each other on an arena-like map.")
(file-name (git-file-name name version))
(sha256
(base32
- "19l83145ya1wk666acr91b6917a63ak7l77d10i5im8xfhv29ml4"))))
+ "1mqr1s72p5bdh4kq2a8hg72dk8lwnddicjnd2cdp1sbfa9lmjym8"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ;no test
@@ -6784,7 +6784,7 @@ action RPGs.")
(define-public flare-game
(package
(name "flare-game")
- (version "1.10")
+ (version "1.11")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -6793,7 +6793,7 @@ action RPGs.")
(file-name (git-file-name name version))
(sha256
(base32
- "0dx4f1j1n3p4q3h0r0fb89f0llvhg9lia0s247pacff3r88ljihk"))))
+ "0bd5g7sd89a9176ilr408hdqzdfv4j7wj0idd685c1n6s01c3h6p"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ;no test
diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm
index 2f5396dd1e..c67ef036ee 100644
--- a/gnu/packages/golang.scm
+++ b/gnu/packages/golang.scm
@@ -48,6 +48,8 @@
#:use-module (gnu packages pcre)
#:use-module (gnu packages lua)
#:use-module (gnu packages mp3)
+ #:use-module (gnu packages textutils)
+ #:use-module (gnu packages tls)
#:use-module (ice-9 match)
#:use-module (srfi srfi-1))
@@ -220,7 +222,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
(package
(inherit go-1.4)
(name "go")
- (version "1.11.10")
+ (version "1.11.12")
(source
(origin
(method url-fetch)
@@ -228,7 +230,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
name version ".src.tar.gz"))
(sha256
(base32
- "06rw962xigbrxblp942jbh7k133blpxg2xfrxi32qdhxkmmfj9yz"))))
+ "09k9zmq7hhgg0bf1y7rwa0kn7q1vkkr94cmg2iv9lq3najh5nykd"))))
(arguments
(substitute-keyword-arguments (package-arguments go-1.4)
((#:phases phases)
@@ -401,7 +403,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
(package
(inherit go-1.4)
(name "go")
- (version "1.12.1")
+ (version "1.12.7")
(source
(origin
(method url-fetch)
@@ -409,7 +411,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
name version ".src.tar.gz"))
(sha256
(base32
- "12l12mmgqvy3nbscy7sz83qj4m6iz5a322aq9sk45f7l9ml2gq8b"))))
+ "04rvwj69gmw3bz8pw5pf10r21ar0pgpnswp15nkddf04dxyl9s4m"))))
(arguments
(substitute-keyword-arguments (package-arguments go-1.4)
((#:phases phases)
@@ -582,7 +584,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
,@(package-native-inputs go-1.4)))
(supported-systems %supported-systems)))
-(define-public go go-1.11)
+(define-public go go-1.12)
(define-public go-github-com-alsm-ioprogress
(let ((commit "063c3725f436e7fba0c8f588547bee21ffec7ac5")
@@ -768,6 +770,79 @@ expressing configuration which is easy for both humans and machines to read.")
(home-page "https://github.com/hashicorp/hcl")
(license license:mpl2.0))))
+(define-public go-golang-org-x-tools
+ (let ((commit "8b927904ee0dec805c89aaf9172f4459296ed6e8")
+ (revision "0"))
+ (package
+ (name "go-golang-org-x-tools")
+ (version (git-version "0.1.3" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://go.googlesource.com/tools")
+ (commit commit)))
+ (file-name (string-append "go.googlesource.com-tools-"
+ version "-checkout"))
+ (sha256
+ (base32
+ "0iinb70xhcjsddgi42ia1n745lx2ibnjdm6m2v666qrk3876vpck"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "golang.org/x/tools"
+ ;; Source-only package
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ ;; Source-only package
+ (delete 'build))))
+ (synopsis "Tools that support the Go programming language")
+ (description "This package provides miscellaneous tools that support the
+Go programming language.")
+ (home-page "https://go.googlesource.com/tools/")
+ (license license:bsd-3))))
+
+(define-public go-golang-org-x-crypto
+ (let ((commit "b7391e95e576cacdcdd422573063bc057239113d")
+ (revision "3"))
+ (package
+ (name "go-golang-org-x-crypto")
+ (version (git-version "0.0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://go.googlesource.com/crypto")
+ (commit commit)))
+ (file-name (string-append "go.googlesource.com-crypto-"
+ version "-checkout"))
+ (sha256
+ (base32
+ "1jqfh81mhgwcc6b9l0bs6rb0707s01qpvn7896i5bsmig46lc7zm"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "golang.org/x/crypto"
+ ;; Source-only package
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ ;; Source-only package
+ (delete 'build)
+ (add-before 'reset-gzip-timestamps 'make-gzip-archive-writable
+ (lambda* (#:key outputs #:allow-other-keys)
+ (map (lambda (file)
+ (make-file-writable file))
+ (find-files
+ (string-append (assoc-ref outputs "out")
+ "/src/golang.org/x/crypto/ed25519/testdata")
+ ".*\\.gz$"))
+ #t)))))
+ (propagated-inputs
+ `(("go-golang-org-x-sys-cpu" ,go-golang-org-x-sys-cpu)))
+ (synopsis "Supplementary cryptographic libraries in Go")
+ (description "This package provides supplementary cryptographic libraries
+for the Go language.")
+ (home-page "https://go.googlesource.com/crypto/")
+ (license license:bsd-3))))
+
(define-public go-golang-org-x-crypto-bcrypt
(let ((commit "b7391e95e576cacdcdd422573063bc057239113d")
(revision "3"))
@@ -933,8 +1008,8 @@ fixed-output-length hash functions and the SHAKE variable-output-length hash
functions defined by FIPS-202.")))
(define-public go-golang-org-x-net-ipv4
- (let ((commit "351d144fa1fc0bd934e2408202be0c29f25e35a0")
- (revision "2"))
+ (let ((commit "d28f0bde5980168871434b95cfc858db9f2a7a99")
+ (revision "3"))
(package
(name "go-golang-org-x-net-ipv4")
(version (git-version "0.0.0" revision commit))
@@ -946,11 +1021,13 @@ functions defined by FIPS-202.")))
(file-name (git-file-name name version))
(sha256
(base32
- "1c5x25qjyz83y92bq0lll5kmznyi3m02wd4c54scgf0866gy938k"))))
+ "18xj31h70m7xxb7gc86n9i21w6d7djbjz67zfaljm4jqskz6hxkf"))))
(build-system go-build-system)
(arguments
`(#:import-path "golang.org/x/net/ipv4"
#:unpack-path "golang.org/x/net"))
+ (propagated-inputs
+ `(("go-golang-org-x-sys-unix" ,go-golang-org-x-sys-unix)))
(synopsis "Go IPv4 support")
(description "This package provides @code{ipv4}, which implements IP-level
socket options for the Internet Protocol version 4.")
@@ -958,8 +1035,8 @@ socket options for the Internet Protocol version 4.")
(license license:bsd-3))))
(define-public go-golang-org-x-net-bpf
- (let ((commit "351d144fa1fc0bd934e2408202be0c29f25e35a0")
- (revision "2"))
+ (let ((commit "d28f0bde5980168871434b95cfc858db9f2a7a99")
+ (revision "3"))
(package
(name "go-golang-org-x-net-bpf")
(version (git-version "0.0.0" revision commit))
@@ -972,11 +1049,13 @@ socket options for the Internet Protocol version 4.")
version "-checkout"))
(sha256
(base32
- "1c5x25qjyz83y92bq0lll5kmznyi3m02wd4c54scgf0866gy938k"))))
+ "18xj31h70m7xxb7gc86n9i21w6d7djbjz67zfaljm4jqskz6hxkf"))))
(build-system go-build-system)
(arguments
`(#:import-path "golang.org/x/net/bpf"
#:unpack-path "golang.org/x/net"))
+ (propagated-inputs
+ `(("go-golang-org-x-sys-unix" ,go-golang-org-x-sys-unix)))
(synopsis "Berkeley Packet Filters (BPF) in Go")
(description "This package provides a Go implementation of the Berkeley
Packet Filter (BPF) virtual machine.")
@@ -984,8 +1063,8 @@ Packet Filter (BPF) virtual machine.")
(license license:bsd-3))))
(define-public go-golang-org-x-net-context
- (let ((commit "351d144fa1fc0bd934e2408202be0c29f25e35a0")
- (revision "2"))
+ (let ((commit "d28f0bde5980168871434b95cfc858db9f2a7a99")
+ (revision "3"))
(package
(name "go-golang-org-x-net-context")
(version (git-version "0.0.0" revision commit))
@@ -998,7 +1077,7 @@ Packet Filter (BPF) virtual machine.")
version "-checkout"))
(sha256
(base32
- "1c5x25qjyz83y92bq0lll5kmznyi3m02wd4c54scgf0866gy938k"))))
+ "18xj31h70m7xxb7gc86n9i21w6d7djbjz67zfaljm4jqskz6hxkf"))))
(build-system go-build-system)
(arguments
`(#:import-path "golang.org/x/net/context"
@@ -1011,8 +1090,8 @@ request-scoped values across API boundaries and between processes.")
(license license:bsd-3))))
(define-public go-golang-org-x-net-internal-socks
- (let ((commit "351d144fa1fc0bd934e2408202be0c29f25e35a0")
- (revision "2"))
+ (let ((commit "d28f0bde5980168871434b95cfc858db9f2a7a99")
+ (revision "3"))
(package
(name "go-golang-org-x-net-internal-socks")
(version (git-version "0.0.0" revision commit))
@@ -1025,7 +1104,7 @@ request-scoped values across API boundaries and between processes.")
version "-checkout"))
(sha256
(base32
- "1c5x25qjyz83y92bq0lll5kmznyi3m02wd4c54scgf0866gy938k"))))
+ "18xj31h70m7xxb7gc86n9i21w6d7djbjz67zfaljm4jqskz6hxkf"))))
(build-system go-build-system)
(arguments
`(#:import-path "golang.org/x/net/internal/socks"
@@ -1036,8 +1115,8 @@ request-scoped values across API boundaries and between processes.")
(license license:bsd-3))))
(define-public go-golang-org-x-net-internal-socket
- (let ((commit "351d144fa1fc0bd934e2408202be0c29f25e35a0")
- (revision "2"))
+ (let ((commit "d28f0bde5980168871434b95cfc858db9f2a7a99")
+ (revision "3"))
(package
(name "go-golang-org-x-net-internal-socket")
(version (git-version "0.0.0" revision commit))
@@ -1050,19 +1129,21 @@ request-scoped values across API boundaries and between processes.")
version "-checkout"))
(sha256
(base32
- "1c5x25qjyz83y92bq0lll5kmznyi3m02wd4c54scgf0866gy938k"))))
+ "18xj31h70m7xxb7gc86n9i21w6d7djbjz67zfaljm4jqskz6hxkf"))))
(build-system go-build-system)
(arguments
`(#:import-path "golang.org/x/net/internal/socket"
#:unpack-path "golang.org/x/net"))
+ (propagated-inputs
+ `(("go-golang-org-x-sys-unix" ,go-golang-org-x-sys-unix)))
(synopsis "")
(description "")
(home-page "https://go.googlesource.com/net/")
(license license:bsd-3))))
(define-public go-golang-org-x-net-internal-iana
- (let ((commit "351d144fa1fc0bd934e2408202be0c29f25e35a0")
- (revision "2"))
+ (let ((commit "d28f0bde5980168871434b95cfc858db9f2a7a99")
+ (revision "3"))
(package
(name "go-golang-org-x-net-internal-iana")
(version (git-version "0.0.0" revision commit))
@@ -1075,7 +1156,7 @@ request-scoped values across API boundaries and between processes.")
version "-checkout"))
(sha256
(base32
- "1c5x25qjyz83y92bq0lll5kmznyi3m02wd4c54scgf0866gy938k"))))
+ "18xj31h70m7xxb7gc86n9i21w6d7djbjz67zfaljm4jqskz6hxkf"))))
(build-system go-build-system)
(arguments
`(#:import-path "golang.org/x/net/internal/iana"
@@ -1087,8 +1168,8 @@ number resources managed by the Internet Assigned Numbers Authority (IANA).")
(license license:bsd-3))))
(define-public go-golang-org-x-net-ipv6
- (let ((commit "351d144fa1fc0bd934e2408202be0c29f25e35a0")
- (revision "2"))
+ (let ((commit "d28f0bde5980168871434b95cfc858db9f2a7a99")
+ (revision "3"))
(package
(name "go-golang-org-x-net-ipv6")
(version (git-version "0.0.0" revision commit))
@@ -1101,11 +1182,13 @@ number resources managed by the Internet Assigned Numbers Authority (IANA).")
version "-checkout"))
(sha256
(base32
- "1c5x25qjyz83y92bq0lll5kmznyi3m02wd4c54scgf0866gy938k"))))
+ "18xj31h70m7xxb7gc86n9i21w6d7djbjz67zfaljm4jqskz6hxkf"))))
(build-system go-build-system)
(arguments
`(#:import-path "golang.org/x/net/ipv6"
#:unpack-path "golang.org/x/net"))
+ (propagated-inputs
+ `(("go-golang-org-x-sys-unix" ,go-golang-org-x-sys-unix)))
(synopsis "Go IPv6 support")
(description "This package provides @code{ipv6}, which implements
IP-level socket options for the Internet Protocol version 6.")
@@ -1113,8 +1196,8 @@ IP-level socket options for the Internet Protocol version 6.")
(license license:bsd-3))))
(define-public go-golang-org-x-net-proxy
- (let ((commit "351d144fa1fc0bd934e2408202be0c29f25e35a0")
- (revision "2"))
+ (let ((commit "d28f0bde5980168871434b95cfc858db9f2a7a99")
+ (revision "3"))
(package
(name "go-golang-org-x-net-proxy")
(version (git-version "0.0.0" revision commit))
@@ -1127,7 +1210,7 @@ IP-level socket options for the Internet Protocol version 6.")
version "-checkout"))
(sha256
(base32
- "1c5x25qjyz83y92bq0lll5kmznyi3m02wd4c54scgf0866gy938k"))))
+ "18xj31h70m7xxb7gc86n9i21w6d7djbjz67zfaljm4jqskz6hxkf"))))
(build-system go-build-system)
(arguments
`(#:import-path "golang.org/x/net/proxy"
@@ -1139,8 +1222,8 @@ for a variety of protocols to proxy network data.")
(license license:bsd-3))))
(define-public go-golang-org-x-sys-unix
- (let ((commit "4d1cda033e0619309c606fc686de3adcf599539e")
- (revision "2"))
+ (let ((commit "5ed2794edfdc1c54dfb61d619c5944285f35d444")
+ (revision "3"))
(package
(name "go-golang-org-x-sys-unix")
(version (git-version "0.0.0" revision commit))
@@ -1152,7 +1235,7 @@ for a variety of protocols to proxy network data.")
(file-name (git-file-name name version))
(sha256
(base32
- "1wgaldbnkmh568v8kkgvnmkskaj96fqrbzhx23yji2kh1432q6gh"))))
+ "1qy8hmv5nwpcywk7sh1pg0s32jwpd4ykh492xzl4mmxy8galwsr5"))))
(build-system go-build-system)
(arguments
`(#:import-path "golang.org/x/sys/unix"
@@ -1174,59 +1257,55 @@ for low-level interaction with the operating system.")
(description "Thi spackage provides @code{cpu}, which offers tools for CPU
feature detection in Go.")))
+(define-public go-golang-org-x-text-encoding
+ (package
+ (name "go-golang-org-x-text-encoding")
+ (version "0.3.2")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://go.googlesource.com/text")
+ (commit (string-append "v" version))))
+ (file-name (string-append "go.googlesource.com-text-"
+ version "-checkout"))
+ (sha256
+ (base32
+ "0flv9idw0jm5nm8lx25xqanbkqgfiym6619w575p7nrdh0riqwqh"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "golang.org/x/text/encoding"
+ #:unpack-path "golang.org/x/text"))
+ (synopsis "Interface for character encodings for conversion to and from
+UTF-8")
+ (description "This package defines an interface for character encodings.
+Specific implementations of encoding for CJK text as well as simple character
+encodings are provided in subpackages.")
+ (home-page "https://go.googlesource.com/text")
+ (license license:bsd-3)))
+
(define-public go-golang-org-x-text-transform
- (let ((commit "e19ae1496984b1c655b8044a65c0300a3c878dd3")
- (revision "1"))
- (package
- (name "go-golang-org-x-text-transform")
- (version (git-version "0.0.0" revision commit))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://go.googlesource.com/text")
- (commit commit)))
- (file-name (string-append "go.googlesource.com-text-"
- version "-checkout"))
- (sha256
- (base32
- "1cvnnx8nwx5c7gr6ajs7sldhbqh52n7h6fsa3i21l2lhx6xrsh4w"))))
- (build-system go-build-system)
- (arguments
- `(#:import-path "golang.org/x/text/transform"
- #:unpack-path "golang.org/x/text"))
- (synopsis "Go text transformation")
- (description "This package provides @code{transform}, which provides
+ (package
+ (inherit go-golang-org-x-text-encoding)
+ (name "go-golang-org-x-text-transform")
+ (arguments
+ `(#:import-path "golang.org/x/text/transform"
+ #:unpack-path "golang.org/x/text"))
+ (synopsis "Go text transformation")
+ (description "This package provides @code{transform}, which provides
reader and writer wrappers that transform the bytes passing through. Example
transformations provided by other packages include normalization and conversion
-between character sets.")
- (home-page "https://go.googlesource.com/text")
- (license license:bsd-3))))
+between character sets.")))
(define-public go-golang-org-x-text-unicode-norm
- (let ((commit "e19ae1496984b1c655b8044a65c0300a3c878dd3")
- (revision "1"))
- (package
- (name "go-golang-org-x-text-unicode-norm")
- (version (git-version "0.0.0" revision commit))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://go.googlesource.com/text")
- (commit commit)))
- (file-name (string-append "go.googlesource.com-text-"
- version "-checkout"))
- (sha256
- (base32
- "1cvnnx8nwx5c7gr6ajs7sldhbqh52n7h6fsa3i21l2lhx6xrsh4w"))))
- (build-system go-build-system)
- (arguments
- `(#:import-path "golang.org/x/text/unicode/norm"
- #:unpack-path "golang.org/x/text"))
- (synopsis "Unicode normalization in Go")
- (description "This package provides @code{norm}, which contains types and
-functions for normalizing Unicode strings.")
- (home-page "https://go.googlesource.com/text")
- (license license:bsd-3))))
+ (package
+ (inherit go-golang-org-x-text-encoding)
+ (name "go-golang-org-x-text-unicode-norm")
+ (arguments
+ `(#:import-path "golang.org/x/text/unicode/norm"
+ #:unpack-path "golang.org/x/text"))
+ (synopsis "Unicode normalization in Go")
+ (description "This package provides @code{norm}, which contains types and
+functions for normalizing Unicode strings.")))
(define-public go-golang-org-x-time-rate
(let ((commit "6dc17368e09b0e8634d71cac8168d853e869a0c7")
@@ -1292,12 +1371,11 @@ is similar to Go's standard library @code{json} and @code{xml} package.")
(license license:expat)))
(define-public go-github-com-getsentry-raven-go
- (let ((commit
- "dffeb57df75d6a911f00232155194e43d79d38d7")
+ (let ((commit "5c24d5110e0e198d9ae16f1f3465366085001d92")
(revision "0"))
(package
(name "go-github-com-getsentry-raven-go")
- (version (git-version "0.0.0" revision commit))
+ (version (git-version "0.2.0" revision commit))
(source
(origin
(method git-fetch)
@@ -1307,14 +1385,16 @@ is similar to Go's standard library @code{json} and @code{xml} package.")
(file-name (git-file-name name version))
(sha256
(base32
- "13sb9rvl3369m7fah3ss9g0hwky259snqfn8gmbr0h5zvp651lja"))))
+ "0lvc376sq8r8jhy2v1m6rf1wyld61pvbk0x6j9xpg56ivqy69xs7"))))
(build-system go-build-system)
(arguments
'(#:import-path "github.com/getsentry/raven-go"))
- (home-page
- "https://github.com/getsentry/raven-go")
+ (propagated-inputs
+ `(("go-github-com-certifi-gocertifi" ,go-github-com-certifi-gocertifi)
+ ("go-github-com-pkg-errors" ,go-github-com-pkg-errors)))
+ (home-page "https://github.com/getsentry/raven-go")
(synopsis "Sentry client in Go")
- (description "This package is Go client API for the Sentry event/error
+ (description "This package is a Go client API for the Sentry event/error
logging system.")
(license license:bsd-3))))
@@ -1859,11 +1939,11 @@ which satisfies the cron expression.")
license:asl2.0)))))
(define-public go-gopkg-in-check-v1
- (let ((commit "20d25e2804050c1cd24a7eea1e7a6447dd0e74ec")
- (revision "0"))
+ (let ((commit "788fd78401277ebd861206a03c884797c6ec5541")
+ (revision "1"))
(package
(name "go-gopkg-in-check-v1")
- (version (git-version "0.0.0" revision commit))
+ (version (git-version "1.0.0" revision commit))
(source
(origin
(method git-fetch)
@@ -1873,43 +1953,42 @@ which satisfies the cron expression.")
(file-name (git-file-name name version))
(sha256
(base32
- "0k1m83ji9l1a7ng8a7v40psbymxasmssbrrhpdv2wl4rhs0nc3np"))))
+ "0v3bim0j375z81zrpr5qv42knqs0y2qv2vkjiqi5axvb78slki1a"))))
(build-system go-build-system)
(arguments
'(#:import-path "gopkg.in/check.v1"))
+ (propagated-inputs
+ `(("go-github-com-kr-pretty" ,go-github-com-kr-pretty)))
(home-page "https://gopkg.in/check.v1")
(synopsis "Test framework for the Go language")
- (description
- "This package provides a test library for the Go language.")
+ (description "This package provides a test library for the Go language.")
(license license:asl2.0))))
(define-public go-gopkg-in-yaml-v2
- (let ((commit "14227de293ca979cf205cd88769fe71ed96a97e2")
- (revision "0"))
- (package
- (name "go-gopkg-in-yaml-v2")
- (version (git-version "0.0.0" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://gopkg.in/yaml.v2.git")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "038hnrjcnjygyi3qidfrkpkakis82qg381sr495d2s40g2dwlzah"))))
- (build-system go-build-system)
- (arguments
- '(#:import-path "gopkg.in/yaml.v2"))
- (native-inputs
- `(("go-gopkg-in-check-v1" ,go-gopkg-in-check-v1)))
- (home-page "https://gopkg.in/yaml.v2")
- (synopsis "YAML reader and writer for the Go language")
- (description
- "This package provides a Go library for encode and decode YAML
+ (package
+ (name "go-gopkg-in-yaml-v2")
+ (version "2.2.2")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://gopkg.in/yaml.v2.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "01wj12jzsdqlnidpyjssmj0r4yavlqy7dwrg7adqd8dicjc4ncsa"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "gopkg.in/yaml.v2"))
+ (native-inputs
+ `(("go-gopkg-in-check-v1" ,go-gopkg-in-check-v1)))
+ (home-page "https://gopkg.in/yaml.v2")
+ (synopsis "YAML reader and writer for the Go language")
+ (description
+ "This package provides a Go library for encode and decode YAML
values.")
- (license license:asl2.0))))
+ (license license:asl2.0)))
(define-public go-github-com-mattn-go-isatty
(package
@@ -3238,6 +3317,171 @@ format in Go.")
(home-page "https://github.com/kr/text")
(license license:expat)))
+(define-public go-golang-org-sql-mock
+ (let ((commit "e98392b8111b45f8126e00af035a0dd95dc12e8b")
+ (version "1.3.3")
+ (revision "1"))
+ (package
+ (name "go-golang-org-sql-mock")
+ (version (git-version version revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/DATA-DOG/go-sqlmock")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "033vv29g2wf6fd757ajfmha30bqin3b07377037zkl051mk6mghs"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/DATA-DOG/go-sqlmock"))
+ (synopsis "Mock library implementing @code{sql/driver}")
+ (description "This library simulates SQL-driver behavior in tests
+without requiring a real database connection.")
+ (home-page "https://github.com/DATA-DOG/go-sqlmock")
+ (license license:expat))))
+
+(define-public go-golang-org-colorful
+ (package
+ (name "go-golang-org-colorful")
+ (version "1.0.2")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/lucasb-eyer/go-colorful")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0fig06880bvk1l92j4127v4x9sar4ds7ga8959gxxghb2w70b7l2"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/lucasb-eyer/go-colorful"))
+ (native-inputs
+ `(("go-golang-org-sql-mock" ,go-golang-org-sql-mock)))
+ (synopsis "Convert between colorspaces and generate colors")
+ (description "This package implements Go's @code{color.Color} interface
+and provides a means of converting colors stored as RGB to various
+colorspaces.")
+ (home-page "https://github.com/lucasb-eyer/go-colorful")
+ (license license:expat)))
+
+(define-public go-github-com-gdamore-encoding
+ (package
+ (name "go-github-com-gdamore-encoding")
+ (version "1.0.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/gdamore/encoding")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1vmm5zll92i2fm4ajqx0gyx0p9j36496x5nabi3y0x7h0inv0pk9"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/gdamore/encoding"))
+ (inputs
+ `(("go-golang-org-x-text-encoding" ,go-golang-org-x-text-encoding)
+ ("go-golang-org-x-text-transform" ,go-golang-org-x-text-transform)))
+ (home-page "https://github.com/gdamore/encoding")
+ (synopsis "Provide encodings missing from Go")
+ (description "This package provides useful encodings not included in the
+standard @code{Text} package, including some for dealing with I/O streams from
+non-UTF-friendly sources.")
+ (license license:expat)))
+
+(define-public go-github-com-gdamore-tcell
+ (let ((commit "aaadc574a6ed8dc3abe56036ca130dcee1ee6b6e")
+ (version "1.1.2")
+ (revision "1"))
+ (package
+ (name "go-github-com-gdamore-tcell")
+ (version (git-version version revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/gdamore/tcell")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0il2nnxp2cqiy73m49215dnf9in3vd25ji8qxbmq87c5qy7i1q9d"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/gdamore/tcell"
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'reset-gzip-timestamps 'make-files-writable
+ (lambda* (#:key outputs #:allow-other-keys)
+ ;; Make sure .gz files are writable so that the
+ ;; 'reset-gzip-timestamps' phase can do its work.
+ (let ((out (assoc-ref outputs "out")))
+ (for-each make-file-writable
+ (find-files out "\\.gz$"))
+ #t))))))
+ (inputs
+ `(("go-github.com-mattn-go-runewidth" ,go-github.com-mattn-go-runewidth)
+ ("go-golang-org-colorful" ,go-golang-org-colorful)
+ ("go-golang-org-x-text-encoding" ,go-golang-org-x-text-encoding)
+ ("go-golang-org-x-text-transform" ,go-golang-org-x-text-transform)
+ ("go-github-com-gdamore-encoding" ,go-github-com-gdamore-encoding)))
+ (home-page "https://github.com/gdamore/tcell")
+ (synopsis "Provide a cell-based view for text terminals")
+ (description "This package includes a full parser and expander for
+terminfo capability strings to avoid hard-coding escape strings for
+formatting. It also favors portability, and includes support for all POSIX
+systems.")
+ (license license:expat))))
+
+(define-public go-github-com-mattn-go-shellwords
+ (let ((commit "2444a32a19f450fabaa0bb3e96a703f15d9a97d2")
+ (version "1.0.5")
+ (revision "1"))
+ (package
+ (name "go-github-com-mattn-go-shellwords")
+ (version (git-version version revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/mattn/go-shellwords")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "08zcgr1az1n8zaxzwdd205j86hczgyc52nxfnw5avpw7rrkf7v0d"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/mattn/go-shellwords"
+ ;; TODO: can't make homeless-shelter:
+ ;; go: disabling cache (/homeless-shelter/.cache/go-build) due to
+ ;; initialization failure: mkdir /homeless-shelter: permission denied
+
+ ;; This doesn't seem to work:
+
+ ;; #:phases
+ ;; (modify-phases %standard-phases
+ ;; (replace 'check
+ ;; (lambda* (#:key import-path #:allow-other-keys)
+ ;; (setenv "HOME" "/tmp")
+ ;; (invoke "go" "test" import-path))))
+
+ ;; TODO: There are also a couple of tests that have stymied Debian in
+ ;; the past. They seem to work when run locally.
+
+ #:tests? #f
+ ))
+ (home-page "https://github.com/mattn/go-shellwords")
+ (synopsis "Parse lines into shell words")
+ (description "This package parses text into shell arguments. Based on
+the @code{cpan} module @code{Parse::CommandLine}.")
+ (license license:expat))))
+
(define-public go-github-com-burntsushi-locker
(let ((commit "a6e239ea1c69bff1cfdb20c4b73dadf52f784b6a")
(revision "0"))
@@ -3271,3 +3515,128 @@ test.
All locks are implemented with read-write mutexes. To use them like a regular
mutex, simply ignore the RLock/RUnlock functions.")
(license license:unlicense))))
+
+(define-public go-github-com-marten-seemann-qtls
+ (package
+ (name "go-github-com-marten-seemann-qtls")
+ (version "0.2.3")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/marten-seemann/qtls")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0b9p7bwkm9hfg1mb565q4nw5k7xyks0z2xagz5fp95azy2psbnfg"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/marten-seemann/qtls"
+ ;; The test suite requires networking.
+ #:tests? #f))
+ (propagated-inputs
+ `(("go-golang-org-x-crypto" ,go-golang-org-x-crypto)))
+ (synopsis "TLS 1.3 with QUIC in Go")
+ (description "This package provides @code{qtls}, a QUIC-capable variant of
+the Go standard library's TLS 1.3 implementation.")
+ (home-page "https://github.com/marten-seemann/qtls")
+ (license license:bsd-3)))
+
+(define-public go-github-com-cheekybits-genny
+ (package
+ (name "go-github-com-cheekybits-genny")
+ (version "1.0.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/cheekybits/genny")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1pcir5ic86713aqa51581rfb67rgc3m0c72ddjfcp3yakv9vyq87"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/cheekybits/genny"))
+ (propagated-inputs
+ `(("go-golang-org-x-tools" ,go-golang-org-x-tools)))
+ (synopsis "Generics for Go")
+ (description "This package provides @code{genny}, a Go language
+implementation of generics.")
+ (home-page "https://github.com/cheekybits/genny/")
+ (license license:expat)))
+
+(define-public go-github-com-lucas-clemente-quic-go
+ (package
+ (name "go-github-com-lucas-clemente-quic-go")
+ (version "0.11.2")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/lucas-clemente/quic-go")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0gqm5mc8alg84ra7yxach34il1jvcij8f76qdqcahnd3d2nhjbia"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/lucas-clemente/quic-go"
+ ;; XXX More packages required...
+ #:tests? #f))
+ (propagated-inputs
+ `(("go-golang-org-x-crypto" ,go-golang-org-x-crypto)
+ ("go-github-com-cheekybits-genny" ,go-github-com-cheekybits-genny)
+ ("go-github-com-marten-seemann-qtls" ,go-github-com-marten-seemann-qtls)))
+ (synopsis "QUIC in Go")
+ (description "This package provides a Go language implementation of the QUIC
+network protocol.")
+ (home-page "https://github.com/lucas-clemente/quic-go")
+ (license license:expat)))
+
+(define-public go-github-com-pkg-errors
+ (let ((commit "27936f6d90f9c8e1145f11ed52ffffbfdb9e0af7")
+ (revision "0"))
+ (package
+ (name "go-github-com-pkg-errors")
+ (version (git-version "0.8.1" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pkg/errors.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0yzmgi6g4ak4q8y7w6x0n5cbinlcn8yc3gwgzy4yck00qdn25d6y"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/pkg/errors"))
+ (synopsis "Go error handling primitives")
+ (description "This package provides @code{error}, which offers simple
+error handling primitives in Go.")
+ (home-page "https://github.com/pkg/errors")
+ (license license:bsd-2))))
+
+(define-public go-github-com-maruel-panicparse
+ (package
+ (name "go-github-com-maruel-panicparse")
+ (version "1.2.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/maruel/panicparse")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "05hf68ifb7ww4rpmxyywbj9r0kyap45p1273ncq4qy2ydv042l8j"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/maruel/panicparse"))
+ (synopsis "Toolkit for parsing Go stack traces")
+ (description "This package provides a toolkit for parsing Go language panic
+stack traces. It simplifies the traces to make salient information more visible
+and aid debugging.")
+ (home-page "https://github.com/maruel/panicparse")
+ (license license:asl2.0)))
diff --git a/gnu/packages/graphics.scm b/gnu/packages/graphics.scm
index 94a797c8f5..bc3a418e99 100644
--- a/gnu/packages/graphics.scm
+++ b/gnu/packages/graphics.scm
@@ -80,16 +80,14 @@
(define-public blender
(package
(name "blender")
- (version "v2.80-rc1")
+ (version "2.80")
(source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://git.blender.org/blender.git")
- (commit version)))
- (file-name (git-file-name name version))
+ (method url-fetch)
+ (uri (string-append "https://download.blender.org/source/"
+ "blender-" version ".tar.gz"))
(sha256
(base32
- "11dcf0rjq42mpphk8r8cy7gvhzzl1cj1vslp98ibh8sdjzaz2mdq"))))
+ "1h550jisdbis50hxwk5kxrvrk1a6sh2fsri3yyj66vhzbi87x7fd"))))
(build-system cmake-build-system)
(arguments
(let ((python-version (version-major+minor (package-version python))))
@@ -162,9 +160,7 @@
"Blender is a 3D graphics creation suite. It supports the entirety of
the 3D pipeline—modeling, rigging, animation, simulation, rendering,
compositing and motion tracking, even video editing and game creation. The
-application can be customized via its API for Python scripting.
-
-WARNING: This is a release candidate build of Blender.")
+application can be customized via its API for Python scripting.")
(license license:gpl2+)))
(define-public blender-2.79
diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm
index e871685f02..b8a53824b4 100644
--- a/gnu/packages/guile.scm
+++ b/gnu/packages/guile.scm
@@ -300,29 +300,27 @@ without requiring the source code to be rewritten.")
(define-public guile-next
;; This is the upcoming Guile 3.0, with JIT support.
- (let ((commit "6f3357b0df64c4be17e72079864c09a542f1c779")
- (revision "1"))
- (package
- (inherit guile-2.2)
- (name "guile-next")
- (version "2.9.2")
- (source (origin
- (inherit (package-source guile-2.2))
- (uri (string-append "ftp://alpha.gnu.org/gnu/guile/guile-"
- version ".tar.xz"))
- (sha256
- (base32
- "1w358df2wmcyzk2ziqrj2zhwqisaqraqfa3008ay23nf1a7bw0z4"))))
- (native-search-paths
- (list (search-path-specification
- (variable "GUILE_LOAD_PATH")
- (files '("share/guile/site/3.0")))
- (search-path-specification
- (variable "GUILE_LOAD_COMPILED_PATH")
- (files '("lib/guile/3.0/site-ccache"
- "share/guile/site/3.0")))))
- (properties '((ftp-server . "alpha.gnu.org")
- (upstream-name . "guile"))))))
+ (package
+ (inherit guile-2.2)
+ (name "guile-next")
+ (version "2.9.3")
+ (source (origin
+ (inherit (package-source guile-2.2))
+ (uri (string-append "ftp://alpha.gnu.org/gnu/guile/guile-"
+ version ".tar.xz"))
+ (sha256
+ (base32
+ "14990wcpysgw58kij03wbgiggmi5z94jmy7wdcqnn6ny7cimkkgr"))))
+ (native-search-paths
+ (list (search-path-specification
+ (variable "GUILE_LOAD_PATH")
+ (files '("share/guile/site/3.0")))
+ (search-path-specification
+ (variable "GUILE_LOAD_COMPILED_PATH")
+ (files '("lib/guile/3.0/site-ccache"
+ "share/guile/site/3.0")))))
+ (properties '((ftp-server . "alpha.gnu.org")
+ (upstream-name . "guile")))))
(define (make-guile-readline guile)
(package
diff --git a/gnu/packages/image-viewers.scm b/gnu/packages/image-viewers.scm
index 6db52e0be0..d33a9857c9 100644
--- a/gnu/packages/image-viewers.scm
+++ b/gnu/packages/image-viewers.scm
@@ -64,7 +64,7 @@
(define-public feh
(package
(name "feh")
- (version "3.1.3")
+ (version "3.2.1")
(home-page "https://feh.finalrewind.org/")
(source (origin
(method url-fetch)
@@ -72,7 +72,7 @@
name "-" version ".tar.bz2"))
(sha256
(base32
- "1vsnxf4as3vyzjfhd8frzb1a8i7wnq7ck5ljx7qxqrnfqvxl1s4z"))))
+ "070axq8jpibcabmjfv4fmjmpk3k349vzvh4qhsi4n62bkcwl35wg"))))
(build-system gnu-build-system)
(arguments
'(#:phases (modify-phases %standard-phases (delete 'configure))
diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index 5d3aa03124..3e5eae47e7 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -250,8 +250,8 @@ APNG patch provides APNG support to libpng.")
("zlib" , zlib)))
(home-page "https://pmt.sourceforge.io/pngcrush")
(synopsis "Utility to compress PNG files")
- (description "pngcrusqh is an optimizer for PNG (Portable Network Graphics)
-files. It can compress them as much as 40% losslessly.")
+ (description "Pngcrush optimizes @acronym{PNG, Portable Network Graphics}
+images. It can further losslessly compress them by as much as 40%.")
(license license:zlib)))
(define-public pngcrunch
diff --git a/gnu/packages/kde.scm b/gnu/packages/kde.scm
index 31b3670079..68d2804dcc 100644
--- a/gnu/packages/kde.scm
+++ b/gnu/packages/kde.scm
@@ -320,7 +320,7 @@ plugins, as well as code to create plugins, or complete applications.")
(define-public krita
(package
(name "krita")
- (version "4.2.2")
+ (version "4.2.5")
(source (origin
(method url-fetch)
(uri (string-append
@@ -329,7 +329,7 @@ plugins, as well as code to create plugins, or complete applications.")
"/krita-" version ".tar.gz"))
(sha256
(base32
- "1pzk5bqp3kh22djhvsvmsc7ybirs4hsnkpg1y9677m2gxwbqnnps"))))
+ "1f14r2mrqasl6nr3sss0xy2h8xlxd5wdcjcd64m9nz2gwlm39r7w"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f
diff --git a/gnu/packages/kodi.scm b/gnu/packages/kodi.scm
index e885aaab39..a9b5b85a47 100644
--- a/gnu/packages/kodi.scm
+++ b/gnu/packages/kodi.scm
@@ -271,7 +271,7 @@ alternatives. In compilers, this can reduce the cascade of secondary errors.")
(define-public kodi
(package
(name "kodi")
- (version "18.2")
+ (version "18.3")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -280,7 +280,7 @@ alternatives. In compilers, this can reduce the cascade of secondary errors.")
(file-name (git-file-name name version))
(sha256
(base32
- "1yzi8171p1mnszyf80lqkl05ql25n73s5gn8pcgvv4jph4yvasnq"))
+ "18fbl5hs3aqccrn0m3x7hp95wlafjav0yvrwmb5q3gj24mwf6jld"))
(patches (search-patches "kodi-skip-test-449.patch"
"kodi-set-libcurl-ssl-parameters.patch"))
(snippet
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 52883282e8..395a06c956 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -182,31 +182,31 @@ defconfig. Return the appropriate make target if applicable, otherwise return
(define deblob-scripts-5.2
(linux-libre-deblob-scripts
- "5.2.1"
+ "5.2.3"
(base32 "076fwxlm6jq6z4vg1xq3kr474zz7qk71r90sf9dnfia3rw2pb4fa")
- (base32 "030cccchli7vnzvxcw261spyzsgnq0m113bjsz8y4vglf6gaz4n9")))
+ (base32 "0d3pp1bqchqc7vnxr1a56km5r0hzjiiipzz2xc3wgjwfi51k9kxc")))
(define deblob-scripts-4.19
(linux-libre-deblob-scripts
- "4.19.59"
+ "4.19.61"
(base32 "02zs405awaxydbapka4nz8h6lmnc0dahgczqsrs5s2bmzjyyqkcy")
- (base32 "07z1bsyny8lldncfh27lb16mgx9r38nswx4vmd24c7n4xva12k2s")))
+ (base32 "1fyacg28aym6virxyn7wk99qil2fjbks3iwm7p3hxy51pccn34za")))
(define deblob-scripts-4.14
(linux-libre-deblob-scripts
- "4.14.133"
+ "4.14.134"
(base32 "091jk9jkn9jf39bxpc7395bhcb7p96nkg3a8047380ki06lnfxh6")
(base32 "0x9nd3hnyrm753cbgdqmy92mbnyw86w64g4hvyibnkpq5n7s3z9n")))
(define deblob-scripts-4.9
(linux-libre-deblob-scripts
- "4.9.185"
+ "4.9.186"
(base32 "1wvldzlv7q2xdbadas87dh593nxr4a8p5n0f8zpm72lja6w18hmg")
(base32 "1gmjn5cwxydg6qb47wcmahwkv37npsjx4papynzkkdxyidmrccya")))
(define deblob-scripts-4.4
(linux-libre-deblob-scripts
- "4.4.185"
+ "4.4.186"
(base32 "0x2j1i88am54ih2mk7gyl79g25l9zz4r08xhl482l3fvjj2irwbw")
(base32 "1x40lbiaizksy8z38ax7wpqr9ldgq7qvkxbb0ca98vd1axpklb10")))
@@ -312,7 +312,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(format #t "~%Packing new Linux-libre tarball...~%")
(force-output)
- (invoke "tar" "cfa" #$output
+ (invoke "tar" "cvfa" #$output
;; Avoid non-determinism in the archive.
"--mtime=@0"
"--owner=root:0"
@@ -350,26 +350,26 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
"linux-" version ".tar.xz"))
(sha256 hash)))
-(define-public linux-libre-5.2-version "5.2.2")
+(define-public linux-libre-5.2-version "5.2.5")
(define-public linux-libre-5.2-pristine-source
(let ((version linux-libre-5.2-version)
- (hash (base32 "173da67d51qcjwrczqsfd6g9phzazqzr11xfxwlf54ckd6117ng5")))
+ (hash (base32 "15ndscsp3yqgas901g6inpmyvinz4cwr5y3md516j2pr8cl40if6")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-5.2)))
-(define-public linux-libre-4.19-version "4.19.60")
+(define-public linux-libre-4.19-version "4.19.63")
(define-public linux-libre-4.19-pristine-source
(let ((version linux-libre-4.19-version)
- (hash (base32 "0ibayrvrnw2lw7si78vdqnr20mm1d3z0g6a0ykndvgn5vdax5x9a")))
+ (hash (base32 "0pfjwpa6szvdr941y13806hlsgsbslfsvkrd5534p1iip5h8g63m")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-4.19)))
-(define-public linux-libre-4.14-version "4.14.134")
+(define-public linux-libre-4.14-version "4.14.135")
(define-public linux-libre-4.14-pristine-source
(let ((version linux-libre-4.14-version)
- (hash (base32 "0b9xj1rwr5fpw2giirfghzxxc0wp1hwf4nqvalx314pxxysyf88b")))
+ (hash (base32 "0x2v0pj4hjb71qkxbqn4ymg6zmyabp91kylyzd270nbig7i234a2")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-4.14)))
@@ -561,7 +561,9 @@ for ARCH and optionally VARIANT, or #f if there is no such configuration."
(search-auxiliary-file file)))
(define %default-extra-linux-options
- `(;; Modules required for initrd:
+ `(;; Some very mild hardening.
+ ("CONFIG_SECURITY_DMESG_RESTRICT" . #t)
+ ;; Modules required for initrd:
("CONFIG_NET_9P" . m)
("CONFIG_NET_9P_VIRTIO" . m)
("CONFIG_VIRTIO_BLK" . m)
@@ -3820,7 +3822,7 @@ and copy/paste text in the console and in xterm.")
(define-public btrfs-progs
(package
(name "btrfs-progs")
- (version "5.1.1")
+ (version "5.2.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://kernel.org/linux/kernel/"
@@ -3828,7 +3830,7 @@ and copy/paste text in the console and in xterm.")
"btrfs-progs-v" version ".tar.xz"))
(sha256
(base32
- "06xybs7rglxjqkbzl2409acb3rgmnc5zc0xhyaxsc2p1x5yipfcw"))))
+ "0crjv3i20nyj2dagfw6q7byshscpn6j7wlqch3apkzzzk00lmb1n"))))
(build-system gnu-build-system)
(outputs '("out"
"static")) ; static versions of the binaries in "out"
@@ -4611,7 +4613,7 @@ are exceeded.")
(define-public mtd-utils
(package
(name "mtd-utils")
- (version "2.0.2")
+ (version "2.1.1")
(source (origin
(method url-fetch)
(uri (string-append
@@ -4619,17 +4621,19 @@ are exceeded.")
"mtd-utils-" version ".tar.bz2"))
(sha256
(base32
- "1f30jszknc5v6ykmil8ajxgksmcg54q3rsp84jsancp9x0dycggv"))))
+ "1lijl89l7hljx8xx70vrz9srd3h41v5gh4b0lvqnlv831yvyh5cd"))))
(arguments
'(#:configure-flags '("--enable-unit-tests")))
(native-inputs
`(("cmocka" ,cmocka)
("pkg-config" ,pkg-config)))
(inputs
- `(("acl" ,acl) ; for XATTR
+ `(("acl" ,acl) ; extended attributes (xattr)
("libuuid" ,util-linux)
("lzo" ,lzo)
- ("zlib" ,zlib)))
+ ("openssl" ,openssl) ; optional crypto support
+ ("zlib" ,zlib)
+ ("zstd" ,zstd "lib")))
(build-system gnu-build-system)
(synopsis "MTD Flash Storage Utilities")
(description "This package provides utilities for testing, partitioning, etc
diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 884d00d935..d2bed231bd 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -6563,7 +6563,90 @@ This system contains the CFFI foreign slot access extension.")))
("trivia.cffi" ,sbcl-trivia.cffi)
("optima" ,sbcl-optima)))
(arguments
- `(#:test-asd-file "trivia.test.asd"))
+ `(#:test-asd-file "trivia.test.asd"
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'create-asd 'remove-component
+ ;; XXX: The original .asd has no components, but our build system
+ ;; creates an entry nonetheless. We need to remove it for the
+ ;; generated .asd to load properly. See trivia.trivial for a
+ ;; similar problem.
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (asd (string-append out "/lib/" (%lisp-type) "/trivia.asd")))
+ (substitute* asd
+ ((" :components
+")
+ ""))
+ (substitute* asd
+ ((" *\\(\\(:compiled-file \"trivia--system\"\\)\\)")
+ ""))))))))
(description "Trivia is a pattern matching compiler that is compatible
with Optima, another pattern matching library for Common Lisp. It is meant to
be faster and more extensible than Optima.")))
+
+(define-public sbcl-mk-string-metrics
+ (package
+ (name "sbcl-mk-string-metrics")
+ (version "0.1.2")
+ (home-page "https://github.com/cbaggers/mk-string-metrics/")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url home-page)
+ (commit version)))
+ (sha256
+ (base32 "0bg0bv2mfd4k0g3x72x563hvmrx18xavaffr6xk5rh4if5j7kcf6"))
+ (file-name (git-file-name name version))))
+ (build-system asdf-build-system/sbcl)
+ (synopsis "Calculate various string metrics efficiently in Common Lisp")
+ (description "This library implements efficient algorithms that calculate
+various string metrics in Common Lisp:
+
+@itemize
+@item Damerau-Levenshtein distance
+@item Hamming distance
+@item Jaccard similarity coefficient
+@item Jaro distance
+@item Jaro-Winkler distance
+@item Levenshtein distance
+@item Normalized Damerau-Levenshtein distance
+@item Normalized Levenshtein distance
+@item Overlap coefficient
+@end itemize\n")
+ (license license:x11)))
+
+(define-public sbcl-cl-str
+ (let ((commit "3d5ec86e3a0199e5973aacde951086dfd754b5e5"))
+ (package
+ (name "sbcl-cl-str")
+ (version (git-version "0.8" "1" commit))
+ (home-page "https://github.com/vindarel/cl-str")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url home-page)
+ (commit commit)))
+ (sha256
+ (base32 "0szzzbygw9h985yxz909vvqrp69pmpcpahn7hn350lnyjislk9ga"))
+ (file-name (git-file-name name version))))
+ (build-system asdf-build-system/sbcl)
+ (inputs
+ `(("cl-ppcre" ,sbcl-cl-ppcre)
+ ("cl-ppcre-unicode" ,sbcl-cl-ppcre-unicode)))
+ (native-inputs
+ `(("prove" ,sbcl-prove)
+ ("prove-asdf" ,sbcl-prove-asdf)))
+ (arguments
+ `(#:asd-file "str.asd"
+ #:asd-system-name "str"
+ #:test-asd-file "str.test.asd"))
+ (synopsis "Modern, consistent and terse Common Lisp string manipulation library")
+ (description "A modern and consistent Common Lisp string manipulation
+library that focuses on modernity, simplicity and discoverability:
+@code{(str:trim s)} instead of @code{(string-trim '(#\\Space ...) s)}), or
+@code{str:concat strings} instead of an unusual format construct; one
+discoverable library instead of many; consistency and composability, where
+@code{s} is always the last argument, which makes it easier to feed pipes and
+arrows.")
+ (license license:expat))))
diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 8a3f64b10d..40fe7d9450 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -3,7 +3,7 @@
;;; Copyright © 2014, 2015, 2017 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net>
;;; Copyright © 2014 Sou Bunnbu <iyzsong@gmail.com>
-;;; Copyright © 2014 Julien Lepiller <julien@lepiller.eu>
+;;; Copyright © 2014, 2019 Julien Lepiller <julien@lepiller.eu>
;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
;;; Copyright © 2015, 2016, 2018 Eric Bavier <bavier@member.fsf.org>
@@ -95,6 +95,7 @@
#:use-module (gnu packages onc-rpc)
#:use-module (gnu packages pcre)
#:use-module (gnu packages perl)
+ #:use-module (gnu packages perl-check)
#:use-module (gnu packages perl-web)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
@@ -116,6 +117,7 @@
#:use-module (gnu packages w3m)
#:use-module (gnu packages web)
#:use-module (gnu packages webkit)
+ #:use-module (gnu packages xdisorg)
#:use-module (gnu packages xorg)
#:use-module (gnu packages xml)
#:use-module ((guix licenses)
@@ -1119,7 +1121,8 @@ compresses it.")
("libxml2" ,libxml2)
("perl" ,perl)
("python-2" ,python-2)
- ("mime-info" ,shared-mime-info)))
+ ("mime-info" ,shared-mime-info)
+ ("startup-notification" ,startup-notification)))
(arguments
'(#:configure-flags
'("--enable-gnutls" "--enable-pgpmime-plugin" "--enable-enchant"
@@ -1195,7 +1198,7 @@ delivery.")
(define-public exim
(package
(name "exim")
- (version "4.92")
+ (version "4.92.1")
(source
(origin
(method url-fetch)
@@ -1204,7 +1207,7 @@ delivery.")
(string-append "https://ftp.exim.org/pub/exim/exim4/old/exim-"
version ".tar.bz2")))
(sha256
- (base32 "127spqn009wa6irp6r1k7a24r8vdwb6mf0raamxn8lbxsnrwy7sl"))))
+ (base32 "132zmxgzz35xwi89g3crw6hd3y74rxj5zcpamakvrnlcn256amdp"))))
(build-system gnu-build-system)
(inputs
`(("bdb" ,bdb-5.3) ; ‘#error Version 6 and later BDB API is not supported’
@@ -1900,6 +1903,136 @@ Khard can also be used from within the email client @command{mutt}.")
in Perl.")
(license bsd-3)))
+(define-public perl-mail-authenticationresults
+ (package
+ (name "perl-mail-authenticationresults")
+ (version "1.20180923")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "mirror://cpan/authors/id/M/MB/MBRADSHAW/"
+ "Mail-AuthenticationResults-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1g1wym9vcbhldwvi4w5pl0fhd4jh2icj975awf4wr5xmkli9mxbz"))))
+ (build-system perl-build-system)
+ (native-inputs
+ `(("perl-test-exception" ,perl-test-exception)))
+ (home-page "https://metacpan.org/release/Mail-AuthenticationResults")
+ (synopsis "Object Oriented Authentication-Results Headers")
+ (description "Mail::AuthenticationResults parses the message header field
+that indicates the message authentication status as per RFC7601. This module
+is not fully compliant with the RFC but it tries to implement most styles of
+Authentication-Results header seen in the wild.")
+ (license perl-license)))
+
+(define-public perl-mail-dkim
+ (package
+ (name "perl-mail-dkim")
+ (version "0.55")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "mirror://cpan/authors/id/M/MB/MBRADSHAW/Mail-DKIM-"
+ version
+ ".tar.gz"))
+ (sha256
+ (base32
+ "18nsh1ff6fkns4xk3y2ixmzmadgggydj11qkzj6nlnq2hzqxsafz"))))
+ (build-system perl-build-system)
+ (propagated-inputs
+ `(("perl-crypt-openssl-rsa" ,perl-crypt-openssl-rsa)
+ ("perl-mail-authenticationresults" ,perl-mail-authenticationresults)
+ ("perl-mailtools" ,perl-mailtools)
+ ("perl-net-dns" ,perl-net-dns)))
+ (native-inputs
+ `(("perl-net-dns-resolver-mock" ,perl-net-dns-resolver-mock)
+ ("perl-test-requiresinternet" ,perl-test-requiresinternet)
+ ("perl-yaml-libyaml" ,perl-yaml-libyaml)))
+ (home-page "https://metacpan.org/release/Mail-DKIM")
+ (synopsis "Signs/verifies Internet mail with DKIM/DomainKey signatures")
+ (description "Mail::DKIM is a Perl module that implements the new Domain
+Keys Identified Mail (DKIM) standard, and the older Yahoo! DomainKeys standard,
+both of which sign and verify emails using digital signatures and DNS records.
+Mail-DKIM can be used by any Perl program that wants to provide support for
+DKIM and/or DomainKeys.")
+ (license gpl3+)))
+
+(define-public dkimproxy
+ (package
+ (name "dkimproxy")
+ (version "1.4.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "mirror://sourceforge/dkimproxy/dkimproxy/"
+ version "/dkimproxy-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1gc5c7lg2qrlck7b0lvjfqr824ch6jkrzkpsn0gjvlzg7hfmld75"))
+ (patches
+ (search-patches "dkimproxy-add-ipv6-support.patch"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'install 'make-wrapper
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (wrap.pl (lambda (scripts keys)
+ (for-each
+ (lambda (script)
+ (wrap-program (string-append out script)
+ `("PERL5LIB" ":" prefix
+ ,(map (λ (input)
+ (string-append
+ (assoc-ref inputs input)
+ "/lib/perl5/site_perl"))
+ keys))))
+ scripts))))
+ (wrap.pl (list "/bin/dkimproxy.in"
+ "/bin/dkimproxy.out")
+ (list "perl-crypt-openssl-rsa"
+ "perl-io-socket-inet6"
+ "perl-mailtools"
+ "perl-mail-authenticationresults"
+ "perl-mail-dkim"
+ "perl-net-dns"
+ "perl-net-server"
+ "perl-socket6"))
+ (wrap.pl (list "/bin/dkim_responder.pl")
+ (list "perl-crypt-openssl-rsa"
+ "perl-mail-dkim"
+ "perl-mailtools"
+ "perl-mime-tools"
+ "perl-net-dns"
+ "perl-timedate"))
+ #t))))))
+ (inputs
+ `(("perl" ,perl)
+ ("perl-crypt-openssl-rsa" ,perl-crypt-openssl-rsa)
+ ("perl-io-socket-inet6" ,perl-io-socket-inet6)
+ ("perl-mailtools" ,perl-mailtools)
+ ("perl-mail-authenticationresults" ,perl-mail-authenticationresults)
+ ("perl-mail-dkim" ,perl-mail-dkim)
+ ("perl-mime-tools" ,perl-mime-tools)
+ ("perl-net-dns" ,perl-net-dns)
+ ("perl-net-server" ,perl-net-server)
+ ("perl-socket6" ,perl-socket6)
+ ("perl-timedate" ,perl-timedate)))
+ (home-page "http://dkimproxy.sourceforge.net/")
+ (synopsis "SMTP proxy to sign and verify Internet mail with DKIM headers")
+ (description
+ "DKIMproxy is an SMTP proxy that signs and verifies Internet mail using the
+@code{Mail::DKIM} Perl module. It comprises two separate proxies: an outbound
+proxy for signing outgoing email, and an inbound proxy for verifying signatures
+of incoming messages.
+
+It was designed for Postfix, but can be used to add DKIM support to nearly any
+existing mail server. With Postfix, the proxies can operate as either
+@code{Before-Queue} or @code{After-Queue} content filters.")
+ (license gpl2+)))
+
(define-public mb2md
(package
(name "mb2md")
diff --git a/gnu/packages/man.scm b/gnu/packages/man.scm
index 04c800e95f..f5c888186f 100644
--- a/gnu/packages/man.scm
+++ b/gnu/packages/man.scm
@@ -162,7 +162,7 @@ the traditional flat-text whatis databases.")
(define-public man-pages
(package
(name "man-pages")
- (version "5.01")
+ (version "5.02")
(source
(origin
(method url-fetch)
@@ -172,7 +172,7 @@ the traditional flat-text whatis databases.")
(string-append "mirror://kernel.org/linux/docs/man-pages/Archive/"
"man-pages-" version ".tar.xz")))
(sha256
- (base32 "09xn8d8xxwgms6h1bvjlgn3mxz51vxf3ra0ry9f5dqi29qry3z3x"))))
+ (base32 "1s4pdz2pwf0kvhdwx2s6lqn3xxzi38yz5jfyq5ymdmswc9gaiyn2"))))
(build-system gnu-build-system)
(arguments
'(#:phases (modify-phases %standard-phases (delete 'configure))
diff --git a/gnu/packages/multiprecision.scm b/gnu/packages/multiprecision.scm
index 7d355220b2..3d899941be 100644
--- a/gnu/packages/multiprecision.scm
+++ b/gnu/packages/multiprecision.scm
@@ -64,12 +64,11 @@
(else '())))))
(synopsis "Multiple-precision arithmetic library")
(description
- "@dfn{GMP} (the GNU Multiple Precision Arithmetic Library) is a library for
-arbitrary-precision arithmetic, operating on signed integers, rational numbers
-and floating point numbers. The precision is only limited by the available
-memory. The library is highly optimized, with a design focus on execution
-speed. It is aimed at use in, for example, cryptography and computational
-algebra.")
+ "The @acronym{GMP, the GNU Multiple Precision Arithmetic} library performs
+arbitrary-precision arithmetic on signed integers, rational numbers and floating
+point numbers. The precision is only limited by the available memory.
+The library is highly optimized, with a design focus on execution speed.
+It is aimed at use in, for example, cryptography and computational algebra.")
(license lgpl3+)
(home-page "https://gmplib.org/")))
@@ -105,7 +104,7 @@ algebra.")
(propagated-inputs `(("gmp" ,gmp))) ; <mpfr.h> refers to <gmp.h>
(synopsis "C library for arbitrary-precision floating-point arithmetic")
(description
- "GNU@tie{}@dfn{MPFR} (Multiple Precision Floating-Point Reliably) is a C
+ "GNU@tie{}@acronym{MPFR, Multiple Precision Floating-Point Reliably} is a C
library for performing multiple-precision, floating-point computations with
correct rounding.")
(license lgpl3+)
@@ -128,8 +127,8 @@ correct rounding.")
("mpfr" ,mpfr)))
(synopsis "C library for arbitrary-precision complex arithmetic")
(description
- "GNU@tie{}@dfn{MPC} (Multiple Precision Complex library) is a C library for
-performing arithmetic on complex numbers. It supports arbitrarily high
+ "GNU@tie{}@acronym{MPC, Multiple Precision Complex library} is a C library
+for performing arithmetic on complex numbers. It supports arbitrarily high
precision and correctly rounds the results.")
(license lgpl3+)
(home-page "http://multiprecision.org/mpc/")))
@@ -150,11 +149,11 @@ precision and correctly rounds the results.")
("mpfr" ,mpfr)))
(synopsis "C library for arbitrary-precision interval arithmetic")
(description
- "@dfn{MPFI} (Multiple Precision Floating-point Interval) is a portable C
+ "@acronym{MPFI, Multiple Precision Floating-point Interval} is a portable C
library for arbitrary-precision interval arithmetic, with intervals represented
-using MPFR reliable floating-point numbers. It's based on the @dfn{GMP} (GNU
-Multiple Precision Arithmetic) and GNU@tie{}@dfn{MPFR} (Multiple Precision
-Floating-Point Reliably) libraries.
+using MPFR reliable floating-point numbers. It's based on the @acronym{GMP, GNU
+Multiple Precision Arithmetic} and GNU@tie{}@acronym{MPFR, Multiple Precision
+Floating-Point Reliably} libraries.
The purpose of arbitrary-precision interval arithmetic is to get results that
are both guaranteed, thanks to interval computation, and accurate, thanks to
diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm
index bc252fc591..16e04aaa13 100644
--- a/gnu/packages/networking.scm
+++ b/gnu/packages/networking.scm
@@ -28,6 +28,7 @@
;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz>
;;; Copyright © 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2019 Vasile Dumitrascu <va511e@yahoo.com>
+;;; Copyright © 2019 Julien Lepiller <julien@lepiller.eu>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -593,14 +594,14 @@ of the same name.")
(define-public wireshark
(package
(name "wireshark")
- (version "3.0.2")
+ (version "3.0.3")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.wireshark.org/download/src/wireshark-"
version ".tar.xz"))
(sha256
- (base32 "0fz5lbyiw4a27fqc4ndi1w20bpcb6wi9k7vjv29l9fhd99kca7ky"))))
+ (base32 "0711jilp9sbgi46d105m3galw8n4wk5yncawi08031qxg2f754mg"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -1081,6 +1082,29 @@ definitions and structure manipulators for Perl.")
offline emulation of DNS.")
(license license:perl-license)))
+(define-public perl-net-dns-resolver-mock
+ (package
+ (name "perl-net-dns-resolver-mock")
+ (version "1.20171219")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "mirror://cpan/authors/id/M/MB/MBRADSHAW/"
+ "Net-DNS-Resolver-Mock-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0m3rxpkv1b9121srvbqkrgzg4m8mnydiydqv34in1i1ixwrl6jn9"))))
+ (build-system perl-build-system)
+ (inputs
+ `(("perl-net-dns" ,perl-net-dns)))
+ (home-page "https://metacpan.org/release/Net-DNS-Resolver-Mock")
+ (synopsis "Mock DNS Resolver object for testing")
+ (description
+ "Net::DNS::Resolver::Mock is a subclass of Net::DNS::Resolver, but returns
+static data from any provided DNS zone file instead of querying the network.
+It is intended primarily for use in testing.")
+ (license license:perl-license)))
+
(define-public perl-netaddr-ip
(package
(name "perl-netaddr-ip")
diff --git a/gnu/packages/patches/dkimproxy-add-ipv6-support.patch b/gnu/packages/patches/dkimproxy-add-ipv6-support.patch
new file mode 100644
index 0000000000..8e9988791d
--- /dev/null
+++ b/gnu/packages/patches/dkimproxy-add-ipv6-support.patch
@@ -0,0 +1,75 @@
+From: Tobias Geerinckx-Rice <me@tobias.gr>
+Date: Fri, 01 Mar 2019 20:51:32 +0100
+Subject: [PATCH] dkimproxy: Add IPv6 support.
+
+The following patch was copied verbatim from Debian[0].
+
+[0]: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=656041
+
+---
+--- dkimproxy-1.4.1.orig/lib/MSDW/SMTP/Server.pm
++++ dkimproxy-1.4.1/lib/MSDW/SMTP/Server.pm
+@@ -11,7 +11,7 @@
+ # Written by Bennett Todd <bet@rahul.net>
+
+ package MSDW::SMTP::Server;
+-use IO::Socket;
++use IO::Socket::INET6;
+ use IO::File;
+
+ =head1 NAME
+@@ -88,14 +88,14 @@
+ =item new(interface => $interface, port => $port);
+
+ The interface and port to listen on must be specified. The interface
+-must be a valid numeric IP address (0.0.0.0 to listen on all
+-interfaces, as usual); the port must be numeric. If this call
+-succeeds, it returns a server structure with an open
+-IO::Socket::INET in it, ready to listen on. If it fails it dies, so
+-if you want anything other than an exit with an explanatory error
+-message, wrap the constructor call in an eval block and pull the
+-error out of $@ as usual. This is also the case for all other
+-methods; they succeed or they die.
++must be a valid numeric IPv4 or IPv6 address (0.0.0.0 or :: to listen
++on all interfaces, as usual); the port must be numeric. If this call
++succeeds, it returns a server structure with an open IO::Socket::INET6
++in it, ready to listen on. If it fails it dies, so if you want
++anything other than an exit with an explanatory error message, wrap
++the constructor call in an eval block and pull the error out of $@ as
++usual. This is also the case for all other methods; they succeed or
++they die.
+
+ =item accept([debug => FD]);
+
+@@ -154,7 +154,7 @@
+ my ($this, @opts) = @_;
+ my $class = ref($this) || $this;
+ my $self = bless { @opts }, $class;
+- $self->{sock} = IO::Socket::INET->new(
++ $self->{sock} = IO::Socket::INET6->new(
+ LocalAddr => $self->{interface},
+ LocalPort => $self->{port},
+ Proto => 'tcp',
+only in patch2:
+unchanged:
+--- dkimproxy-1.4.1.orig/scripts/dkimproxy.out
++++ dkimproxy-1.4.1/scripts/dkimproxy.out
+@@ -314,17 +314,11 @@
+ {
+ my $self = shift;
+
+- # try to determine peer's address
+- use Socket;
+- my $peersockaddr = getpeername(STDOUT);
+- my ($port, $iaddr) = sockaddr_in($peersockaddr);
+- $ENV{REMOTE_ADDR} = inet_ntoa($iaddr);
+-
+ # initialize syslog
+ eval
+ {
+ openlog("dkimproxy.out", "perror,pid,ndelay", "mail");
+- syslog("debug", '%s', "connect from $ENV{REMOTE_ADDR}");
++ syslog("debug", '%s', "connect from $self->{server}->{peeraddr}");
+ };
+ if (my $E = $@)
+ {
diff --git a/gnu/packages/patches/libvirt-remove-ATTRIBUTE_UNUSED.patch b/gnu/packages/patches/libvirt-remove-ATTRIBUTE_UNUSED.patch
new file mode 100644
index 0000000000..5bfefa70bb
--- /dev/null
+++ b/gnu/packages/patches/libvirt-remove-ATTRIBUTE_UNUSED.patch
@@ -0,0 +1,34 @@
+From: Tobias Geerinckx-Rice <me@tobias.gr>
+Date: Thu, 25 Jul 2019 21:48:25 +0200
+Subject: [PATCH]: libvirt: remove ATTRIBUTE_UNUSED
+
+This should fix the error reported here[0]. Patch taken verbatim from
+upstream[1].
+
+[0]: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36634#28
+[1]: https://github.com/libvirt/libvirt/commit/759bf903a6c24a8efa25c7cf4b099d952eda9bd3
+
+From 759bf903a6c24a8efa25c7cf4b099d952eda9bd3 Mon Sep 17 00:00:00 2001
+From: Pavel Hrdina <phrdina@redhat.com>
+Date: Mon, 22 Jul 2019 14:46:34 +0200
+Subject: [PATCH] vircgroupv2: remove ATTRIBUTE_UNUSED for used attribute
+
+Signed-off-by: Pavel Hrdina <phrdina@redhat.com>
+Acked-by: Peter Krempa <pkrempa@redhat.com>
+---
+ src/util/vircgroupv2.c | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/src/util/vircgroupv2.c b/src/util/vircgroupv2.c
+index af3192c99c..e36c36685b 100644
+--- a/src/util/vircgroupv2.c
++++ b/src/util/vircgroupv2.c
+@@ -399,7 +399,7 @@ virCgroupV2EnableController(virCgroupPtr group,
+
+
+ static int
+-virCgroupV2MakeGroup(virCgroupPtr parent ATTRIBUTE_UNUSED,
++virCgroupV2MakeGroup(virCgroupPtr parent,
+ virCgroupPtr group,
+ bool create,
+ unsigned int flags)
diff --git a/gnu/packages/patches/pcre2-fix-jit_match-crash.patch b/gnu/packages/patches/pcre2-fix-jit_match-crash.patch
new file mode 100644
index 0000000000..7543319ee9
--- /dev/null
+++ b/gnu/packages/patches/pcre2-fix-jit_match-crash.patch
@@ -0,0 +1,25 @@
+From: Tobias Geerinckx-Rice <me@tobias.gr>
+Date: Thu, 01 Aug 2019 21:12:52 +0200
+Subject: [PATCH] gnu: pcre2: Fix jit_match crash.
+
+Fixes <https://bugs.exim.org/show_bug.cgi?id=2421>, reported as a ‘secrity
+problem’.
+
+Copied verbatim from upstream[0].
+
+[0]: https://vcs.pcre.org/pcre2/code/trunk/src/pcre2_jit_compile.c?view=patch&r1=1089&r2=1092&pathrev=1092
+
+--- trunk/src/pcre2_jit_compile.c 2019/05/10 13:15:20 1089
++++ trunk/src/pcre2_jit_compile.c 2019/05/13 16:38:18 1092
+@@ -8571,7 +8571,10 @@
+ PCRE2_SPTR bptr;
+ uint32_t c;
+
+-GETCHARINC(c, cc);
++/* Patch by PH */
++/* GETCHARINC(c, cc); */
++
++c = *cc++;
+ #if PCRE2_CODE_UNIT_WIDTH == 32
+ if (c >= 0x110000)
+ return NULL;
diff --git a/gnu/packages/pcre.scm b/gnu/packages/pcre.scm
index 1395a3ea40..7385c78b9f 100644
--- a/gnu/packages/pcre.scm
+++ b/gnu/packages/pcre.scm
@@ -89,6 +89,7 @@ POSIX regular expression API.")
(define-public pcre2
(package
(name "pcre2")
+ (replacement pcre2/fixed)
(version "10.33")
(source (origin
(method url-fetch)
@@ -125,3 +126,14 @@ own native API, as well as a set of wrapper functions that correspond to the
POSIX regular expression API.")
(license license:bsd-3)
(home-page "https://www.pcre.org/")))
+
+(define-public pcre2/fixed
+ ;; PHP >= 7.3.8 requires a fixed version at build time, so make it public
+ ;; and hide it in the UI.
+ (package
+ (inherit pcre2)
+ (source
+ (origin
+ (inherit (package-source pcre2))
+ (patches (search-patches "pcre2-fix-jit_match-crash.patch"))))
+ (properties '((hidden? . #t)))))
diff --git a/gnu/packages/php.scm b/gnu/packages/php.scm
index 62444308db..2411de55c9 100644
--- a/gnu/packages/php.scm
+++ b/gnu/packages/php.scm
@@ -58,15 +58,15 @@
(define-public php
(package
(name "php")
- (version "7.3.6")
+ (version "7.3.8")
(home-page "https://secure.php.net/")
(source (origin
(method url-fetch)
(uri (string-append home-page "distributions/"
- name "-" version ".tar.xz"))
+ "php-" version ".tar.xz"))
(sha256
(base32
- "0r51aiff2abbr3d2swhvja0wm56sjxzqbciabcvvq3m3v9kqkz7y"))
+ "19fm990yl97fq538lkp0m1imbp30qrx7785x211w1n15wqm6n17n"))
(modules '((guix build utils)))
(snippet
'(with-directory-excursion "ext"
@@ -76,7 +76,7 @@
;;"mbstring/libmbfl"
;;"date/lib"
;;"bcmath/libbcmath"
- ;;"fileinfo/libmagic" ; This is a patched version of libmagic.
+ ;;"fileinfo/libmagic" ; a patched version of libmagic
'("gd/libgd"
"mbstring/oniguruma"
"pcre/pcre2lib"
@@ -367,7 +367,7 @@
("oniguruma" ,oniguruma-5)
("openldap" ,openldap)
("openssl" ,openssl)
- ("pcre" ,pcre2)
+ ("pcre" ,pcre2/fixed) ; must be /fixed for tests
("postgresql" ,postgresql)
("readline" ,readline)
("sqlite" ,sqlite)
@@ -378,7 +378,7 @@
`(("pkg-config" ,pkg-config)
("bison" ,bison)
("intltool" ,intltool)
- ("procps" ,procps))) ; For tests.
+ ("procps" ,procps))) ; for tests
(synopsis "PHP programming language")
(description
"PHP (PHP Hypertext Processor) is a server-side (CGI) scripting
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 362ab7f031..6410a13df7 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -10945,25 +10945,36 @@ command @command{natsort} that exposes this functionality in the command line.")
(define-public python-glances
(package
(name "python-glances")
- (version "3.0.2")
+ (version "3.1.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "Glances" version))
(sha256
(base32
- "09fxysfp1n16csqvzvawy74qm6a94nvwjf3vcf5gkqp4i6k4vjjy"))))
+ "07j1ggzsqiskyz1i4mrnyr9i95v0dqi0i0hibnv1l188km8shmi8"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ ;; Glances phones PyPI for weekly update checks by default.
+ ;; Disable these. The user can re-enable them if desired.
+ (substitute* "glances/outdated.py"
+ (("^(.*)self\\.load_config\\(config\\)\n" line indentation)
+ (string-append indentation
+ "self.args.disable_check_update = True\n"
+ line)))
+ #t))))
(build-system python-build-system)
(propagated-inputs
- `(("python-psutil" ,python-psutil)))
+ `(("python-future" ,python-future)
+ ("python-psutil" ,python-psutil)))
(home-page
"https://github.com/nicolargo/glances")
- (synopsis
- "A cross-platform curses-based monitoring tool")
+ (synopsis "Cross-platform curses-based monitoring tool")
(description
"Glances is a curses-based monitoring tool for a wide variety of platforms.
-Glances uses the PsUtil library to get information from your system. It monitors
-CPU, load, memory, network bandwidth, disk I/O, disk use, and more.")
+Glances uses the PsUtil library to get information from your system. It
+monitors CPU, load, memory, network bandwidth, disk I/O, disk use, and more.")
(license license:lgpl3+)))
(define-public python2-glances
diff --git a/gnu/packages/regex.scm b/gnu/packages/regex.scm
index 71dac09737..ad01814318 100644
--- a/gnu/packages/regex.scm
+++ b/gnu/packages/regex.scm
@@ -30,7 +30,7 @@
(define-public re2
(package
(name "re2")
- (version "2019-07-01")
+ (version "2019-08-01")
(home-page "https://github.com/google/re2")
(source (origin
(method git-fetch)
@@ -38,7 +38,7 @@
(file-name (git-file-name name version))
(sha256
(base32
- "1ric6gdnf5mqj5iy5f81al49mr3mmjqj3nqi3mw2hjdbbgwkdn71"))))
+ "11w9x16y26nfgliis28ivrh9b1x6pxawdwxfwxfjh34h57c0dkzg"))))
(build-system gnu-build-system)
(arguments
`(#:modules ((guix build gnu-build-system)
diff --git a/gnu/packages/scanner.scm b/gnu/packages/scanner.scm
index d23da9e502..b371cf3105 100644
--- a/gnu/packages/scanner.scm
+++ b/gnu/packages/scanner.scm
@@ -34,15 +34,16 @@
(define-public sane-backends-minimal
(package
(name "sane-backends-minimal")
- (version "1.0.27")
+ (version "1.0.28")
(source (origin
(method url-fetch)
(uri (string-append
- "https://alioth.debian.org/frs/download.php/latestfile/176/"
+ "https://gitlab.com/sane-project/backends/uploads/"
+ "9e718daff347826f4cfe21126c8d5091/"
"sane-backends-" version ".tar.gz"))
(sha256
(base32
- "1j9nbqspaj0rlgalafb5z6r606k0i22kz0rcpd744p176yzlfdr9"))
+ "00yy8q9hqdf0zjxxl4d8njr9zf0hhi3a9ib23ikc2anqf8zhy9ii"))
(modules '((guix build utils)))
(snippet
;; Generated HTML files and udev rules normally embed a
@@ -63,6 +64,10 @@
(add-before 'configure 'disable-backends
(lambda _
(setenv "BACKENDS" " ")
+
+ ;; Disable tests that may require back ends to be built.
+ (substitute* "testsuite/Makefile.in"
+ ((" backend ") " "))
#t))
(add-after 'unpack 'disable-failing-tests
(lambda _
@@ -113,6 +118,7 @@ package contains the library, but no drivers.")
(name "sane-backends")
(inputs
`(("hplip" ,(@ (gnu packages cups) hplip-minimal))
+ ("libjpeg" ,libjpeg) ; wanted by pixma, epsonds, others
("libpng" ,libpng) ; support ‘scanimage --format=png’
,@(package-inputs sane-backends-minimal)))
(arguments
diff --git a/gnu/packages/sdl.scm b/gnu/packages/sdl.scm
index b6b28b7d06..cb5b5839df 100644
--- a/gnu/packages/sdl.scm
+++ b/gnu/packages/sdl.scm
@@ -107,7 +107,7 @@ joystick, and graphics hardware.")
(define-public sdl2
(package (inherit sdl)
(name "sdl2")
- (version "2.0.9")
+ (version "2.0.10")
(source (origin
(method url-fetch)
(uri
@@ -115,7 +115,7 @@ joystick, and graphics hardware.")
version ".tar.gz"))
(sha256
(base32
- "1c94ndagzkdfqaa838yqg589p1nnqln8mv0hpwfhrkbfczf8cl95"))))
+ "0mqxp6w5jhbq6y1j690g9r3gpzwjxh4czaglw8x05l7hl49nqrdl"))))
(arguments
(substitute-keyword-arguments (package-arguments sdl)
((#:configure-flags flags)
diff --git a/gnu/packages/shells.scm b/gnu/packages/shells.scm
index 1900925022..0579c167fc 100644
--- a/gnu/packages/shells.scm
+++ b/gnu/packages/shells.scm
@@ -709,18 +709,17 @@ interactive POSIX shell targeted at resource-constrained systems.")
(define-public mksh
(package
(name "mksh")
- (version "56")
+ (version "57")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.mirbsd.org/MirOS/dist/mir/mksh/mksh-R"
version ".tgz"))
(sha256
- (base32
- "1x4zjj9259ijpf8jw0nyh1fnr1pbm5fwvylclpvcrlb45xrglf5d"))))
+ (base32 "0xdykm1z710wriwd6nc8s8lwk2dwjl63dq96xxaawlid31a1241x"))))
(build-system gnu-build-system)
(arguments
- `(#:tests? #f ; tests require access to /dev/tty
+ `(#:tests? #f ; tests require access to /dev/tty
#:phases
(modify-phases %standard-phases
(delete 'configure)
@@ -744,7 +743,7 @@ interactive POSIX shell targeted at resource-constrained systems.")
Korn Shell programming language and a successor to the Public Domain Korn
Shell (pdksh).")
(license (list miros
- isc)))) ; strlcpy.c
+ isc)))) ; strlcpy.c
(define-public oil-shell
(package
diff --git a/gnu/packages/syncthing.scm b/gnu/packages/syncthing.scm
index cd3dd0de54..c35ee8639c 100644
--- a/gnu/packages/syncthing.scm
+++ b/gnu/packages/syncthing.scm
@@ -30,7 +30,7 @@
(define-public syncthing
(package
(name "syncthing")
- (version "1.1.4")
+ (version "1.2.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/syncthing/syncthing"
@@ -38,7 +38,7 @@
"/syncthing-source-v" version ".tar.gz"))
(sha256
(base32
- "0pkb9vdb10lnlk6sgg6hxgkdjnvxx90cfdf8vgrc5sljzm5qhr6l"))
+ "1l7crhggg2vq4y7pgzsj8wp7k4l9hw5yblflly5bzwywzxz8ff83"))
(modules '((guix build utils)))
;; Delete bundled ("vendored") free software source code.
(snippet '(begin
@@ -102,10 +102,14 @@
("go-github-com-vitrun-qart-coding" ,go-github-com-vitrun-qart-coding)
("go-github-com-vitrun-qart-gf256" ,go-github-com-vitrun-qart-gf256)
("go-github-com-mattn-go-isatty" ,go-github-com-mattn-go-isatty)
- ("go-golang-org-x-crypto-bcrypt" ,go-golang-org-x-crypto-bcrypt)
- ("go-golang-org-x-crypto-blowfish" ,go-golang-org-x-crypto-blowfish)
+ ("go-golang-org-x-crypto" ,go-golang-org-x-crypto)
("go-github-com-flynn-archive-go-shlex"
,go-github-com-flynn-archive-go-shlex)
+ ("go-github-com-getsentry-raven-go" ,go-github-com-getsentry-raven-go)
+ ("go-github-com-maruel-panicparse" ,go-github-com-maruel-panicparse)
+ ("go-github-com-ccding-go-stun" ,go-github-com-ccding-go-stun)
+ ("go-github-com-audriusbutkevicius-pfilter" ,go-github-com-audriusbutkevicius-pfilter)
+ ("go-github-com-lucas-clemente-quic-go" ,go-github-com-lucas-clemente-quic-go)
;; For tests
("go-github-com-d4l3k-messagediff" ,go-github-com-d4l3k-messagediff)))
@@ -569,11 +573,11 @@ run-time in Go.")
(license asl2.0)))
(define-public go-github-com-syndtr-goleveldb
- (let ((commit "34011bf325bce385408353a30b101fe5e923eb6e")
- (revision "2"))
+ (let ((commit "c3a204f8e96543bb0cc090385c001078f184fc46")
+ (revision "3"))
(package
(name "go-github-com-syndtr-goleveldb")
- (version (git-version "0.0.0" revision commit))
+ (version (git-version "1.0.1" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
@@ -582,7 +586,7 @@ run-time in Go.")
(file-name (git-file-name name version))
(sha256
(base32
- "097ja0vyj6p27zrxha9nhk09fj977xsvhmd3bk2hbyvnbw4znnhd"))))
+ "18cac90dim2z5g28vazzibxa058q2ynihsmf0vbscwzba6l5s5ms"))))
(build-system go-build-system)
(propagated-inputs
`(("go-github-com-golang-snappy" ,go-github-com-golang-snappy)))
@@ -739,28 +743,6 @@ hashes.")
(home-page "https://github.com/chmduquesne/rollinghash")
(license expat))))
-(define-public go-github-com-pkg-errors
- (package
- (name "go-github-com-pkg-errors")
- (version "0.8.1")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/pkg/errors.git")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0g5qcb4d4fd96midz0zdk8b9kz8xkzwfa8kr1cliqbg8sxsy5vd1"))))
- (build-system go-build-system)
- (arguments
- `(#:import-path "github.com/pkg/errors"))
- (synopsis "Go error handling primitives")
- (description "This package provides @code{error}, which offers simple
-error handling primitives in Go.")
- (home-page "https://github.com/pkg/errors")
- (license bsd-2)))
-
(define-public go-github-com-petermattis-goid
(let ((commit "3db12ebb2a599ba4a96bea1c17b61c2f78a40e02")
(revision "0"))
@@ -863,20 +845,18 @@ bounds.")
(license expat))))
(define-public go-github-com-golang-protobuf-proto
- (let ((commit "1e59b77b52bf8e4b449a57e6f79f21226d571845")
- (revision "0"))
(package
(name "go-github-com-golang-protobuf-proto")
- (version (git-version "0.0.0" revision commit))
+ (version "1.3.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/golang/protobuf.git")
- (commit commit)))
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
- "19bkh81wnp6njg3931wky6hsnnl2d1ig20vfjxpv450sd3k6yys8"))))
+ "15am4s4646qy6iv0g3kkqq52rzykqjhm4bf08dk0fy2r58knpsyl"))))
(build-system go-build-system)
(arguments
'(#:import-path "github.com/golang/protobuf/proto"
@@ -887,11 +867,11 @@ bounds.")
(description "This package provides Go support for the Protocol Buffers
data serialization format.")
(home-page "https://github.com/golang/protobuf")
- (license bsd-3))))
+ (license bsd-3)))
(define-public go-github-com-prometheus-client-model-go
- (let ((commit "99fa1f4be8e564e8a6b613da7fa6f46c9edafc6c")
- (revision "0"))
+ (let ((commit "fd36f4220a901265f90734c3183c5f0c91daa0b8")
+ (revision "1"))
(package
(name "go-github-com-prometheus-client-model-go")
(version (git-version "0.0.2" revision commit))
@@ -903,7 +883,7 @@ data serialization format.")
(file-name (git-file-name name version))
(sha256
(base32
- "19y4ywsivhpxj7ikf2j0gm9k3cmyw37qcbfi78n526jxcc7kw998"))))
+ "1bs5d72k361llflgl94c22n0w53j30rsfh84smgk8mbjbcmjsaa5"))))
(build-system go-build-system)
(arguments
'(#:import-path "github.com/prometheus/client_model/go"
@@ -948,20 +928,18 @@ message streaming.")
(license asl2.0))))
(define-public go-github-com-prometheus-common-expfmt
- (let ((commit "2e54d0b93cba2fd133edc32211dcc32c06ef72ca")
- (revision "0"))
(package
(name "go-github-com-prometheus-common-expfmt")
- (version (git-version "0.0.0" revision commit))
+ (version "0.4.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/prometheus/common.git")
- (commit commit)))
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
- "14kn5w7imcxxlfdqxl21fsnlf1ms7200g3ldy29hwamldv8qlm7j"))))
+ "0sf4sjdckblz1hqdfvripk3zyp8xq89w7q75kbsyg4c078af896s"))))
(build-system go-build-system)
(arguments
'(#:import-path "github.com/prometheus/common/expfmt"
@@ -995,23 +973,21 @@ message streaming.")
(description "This package provides tools for reading and writing
Prometheus metrics.")
(home-page "https://github.com/prometheus/common")
- (license asl2.0))))
+ (license asl2.0)))
(define-public go-github-com-prometheus-common-model
- (let ((commit "2e54d0b93cba2fd133edc32211dcc32c06ef72ca")
- (revision "0"))
(package
(name "go-github-com-prometheus-common-model")
- (version (git-version "0.0.0" revision commit))
+ (version "0.4.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/prometheus/common.git")
- (commit commit)))
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
- "14kn5w7imcxxlfdqxl21fsnlf1ms7200g3ldy29hwamldv8qlm7j"))))
+ "0sf4sjdckblz1hqdfvripk3zyp8xq89w7q75kbsyg4c078af896s"))))
(build-system go-build-system)
(arguments
'(#:import-path "github.com/prometheus/common/model"
@@ -1020,36 +996,37 @@ Prometheus metrics.")
(description "This package provides a component of the Go Prometheus
implementation.")
(home-page "https://github.com/prometheus/common")
- (license asl2.0))))
+ (license asl2.0)))
(define-public go-github-com-prometheus-procfs
- (let ((commit "b15cd069a83443be3154b719d0cc9fe8117f09fb")
- (revision "0"))
(package
(name "go-github-com-prometheus-procfs")
- (version (git-version "0.0.0" revision commit))
+ (version "0.0.3")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/prometheus/procfs.git")
- (commit commit)))
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
- "1cr45wg2m40bj2za8f32mq09rjlcnk5kfam0h0hr8wcb015k4wxj"))))
+ "18c4m795fwng8f8qa395f3crvamlbk5y5afk8b5rzyisnmjq774y"))))
(build-system go-build-system)
(arguments
- '(#:import-path "github.com/prometheus/procfs"))
+ '(#:import-path "github.com/prometheus/procfs"
+ ;; The tests require Go modules, which are not yet supported in Guix's
+ ;; Go build system.
+ #:tests? #f))
(synopsis "Go library for reading @file{/proc}")
(description "The @code{procfs} Go package provides functions to retrieve
system, kernel, and process metrics from the @file{/proc} pseudo file system.")
(home-page "https://github.com/prometheus/procfs")
- (license asl2.0))))
+ (license asl2.0)))
(define-public go-github-com-client-golang-prometheus-promhttp
(package
(name "go-github-com-client-golang-prometheus-promhttp")
- (version "0.9.2")
+ (version "0.9.4")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -1058,7 +1035,7 @@ system, kernel, and process metrics from the @file{/proc} pseudo file system.")
(file-name (git-file-name name version))
(sha256
(base32
- "02b4yg6rfag0m3j0i39sillcm5xczwv8h133vn12yr8qw04cnigs"))))
+ "0s134fj4i7k6pxdmxwkdi7amb1882yq33spv15hg3pkpbd3h311p"))))
(build-system go-build-system)
(arguments
'(#:tests? #f ; The tests require internet access
@@ -1087,7 +1064,7 @@ server tools for Prometheus metrics.")
(define-public go-github-com-prometheus-client-golang-prometheus
(package
(name "go-github-com-prometheus-client-golang-prometheus")
- (version "0.9.2")
+ (version "0.9.4")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -1096,7 +1073,7 @@ server tools for Prometheus metrics.")
(file-name (git-file-name name version))
(sha256
(base32
- "02b4yg6rfag0m3j0i39sillcm5xczwv8h133vn12yr8qw04cnigs"))))
+ "0s134fj4i7k6pxdmxwkdi7amb1882yq33spv15hg3pkpbd3h311p"))))
(build-system go-build-system)
(arguments
'(#:import-path "github.com/prometheus/client_golang/prometheus"
@@ -1204,7 +1181,7 @@ quoting, commenting, and escaping.")
(define-public go-github-com-prometheus-common-internal-bitbucket-org-ww-goautoneg
(package
(name "go-github-com-prometheus-common-internal-bitbucket-org-ww-goautoneg")
- (version "0.2.0")
+ (version "0.4.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -1213,7 +1190,7 @@ quoting, commenting, and escaping.")
(file-name (git-file-name name version))
(sha256
(base32
- "02kym6lcfnlq23qbv277jr0q1n7jj0r14gqg93c7wn7gc44jv3vp"))))
+ "0sf4sjdckblz1hqdfvripk3zyp8xq89w7q75kbsyg4c078af896s"))))
(build-system go-build-system)
(arguments
'(#:import-path "github.com/prometheus/common/internal/bitbucket.org/ww/goautoneg"
@@ -1222,3 +1199,53 @@ quoting, commenting, and escaping.")
(description "This package is an internal component of Prometheus.")
(home-page "https://github.com/prometheus/common")
(license asl2.0)))
+
+(define-public go-github-com-audriusbutkevicius-pfilter
+ (let ((commit "c55ef6137fc6f075801eac099cc2687ede0f101d")
+ (revision "3"))
+ (package
+ (name "go-github-com-audriusbutkevicius-pfilter")
+ (version (git-version "0.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/AudriusButkevicius/pfilter.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0xzhwyd0w21bhvzl5pinn22hp0y6h44rh3s2ppql69rafc6zd3c6"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/AudriusButkevicius/pfilter"))
+ (synopsis "Filter packets into mulitple virtual connections")
+ (description "Pfilter is a Go package for filtering packets into multiple
+virtual connections from a single physical connection.")
+ (home-page "https://github.com/AudriusButkevicius/pfilter")
+ (license expat))))
+
+(define-public go-github-com-ccding-go-stun
+ (let ((commit "be486d185f3dfcb2dbf8429332da50a0da7f95a6")
+ (revision "2"))
+ (package
+ (name "go-github-com-ccding-go-stun")
+ (version (git-version "0.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ccding/go-stun.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1gr0rw1c1y7wh6913lyn5k4ig023by27i36bly6am8dwgrgp34ww"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/ccding/go-stun"))
+ (synopsis "STUN client implementation")
+ (description "Go-stun is a go implementation of the STUN client (RFC 3489
+and RFC 5389).")
+ (home-page "https://github.com/ccding/go-stun")
+ (license asl2.0))))
diff --git a/gnu/packages/telephony.scm b/gnu/packages/telephony.scm
index b5c14143a8..cf37756503 100644
--- a/gnu/packages/telephony.scm
+++ b/gnu/packages/telephony.scm
@@ -847,10 +847,10 @@ This package provides a library common to all Jami clients.")
(home-page "https://jami.net")
(license license:gpl3+)))
-(define-public jami-client-gnome
+(define-public jami
(package
(inherit libring)
- (name "jami-client-gnome")
+ (name "jami")
(build-system cmake-build-system)
(inputs
`(("libringclient" ,libringclient)
@@ -906,3 +906,6 @@ IAX protocols, as well as decentralized calling using P2P-DHT.
This package provides the Jami client for the GNOME desktop.")
(home-page "https://jami.net")
(license license:gpl3+)))
+
+(define-public jami-client-gnome
+ (deprecated-package "jami-client-gnome" jami))
diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm
index 4d0e875012..df8d1e4b79 100644
--- a/gnu/packages/terminals.scm
+++ b/gnu/packages/terminals.scm
@@ -54,6 +54,7 @@
#:use-module (gnu packages gl)
#:use-module (gnu packages glib)
#:use-module (gnu packages gnome)
+ #:use-module (gnu packages golang)
#:use-module (gnu packages gtk)
#:use-module (gnu packages image)
#:use-module (gnu packages libevent)
@@ -754,6 +755,35 @@ with terminals in Go.")
(home-page "https://go.googlesource.com/crypto/")
(license license:bsd-3))))
+(define-public go-github-com-junegunn-fzf
+ (package
+ (name "go-github-com-junegunn-fzf")
+ (version "0.18.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/junegunn/fzf")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0pwpr4fpw56yzzkcabzzgbgwraaxmp7xzzmap7w1xsrkbj7dl2xl"))))
+ (build-system go-build-system)
+ (arguments
+ `(#:import-path "github.com/junegunn/fzf"))
+ (inputs
+ `(("go-github.com-mattn-go-runewidth" ,go-github.com-mattn-go-runewidth)
+ ("go-github-com-mattn-go-shellwords" ,go-github-com-mattn-go-shellwords)
+ ("go-github-com-mattn-go-isatty" ,go-github-com-mattn-go-isatty)
+ ("go-github-com-gdamore-tcell" ,go-github-com-gdamore-tcell)
+ ("go-golang-org-x-crypto-ssh-terminal" ,go-golang-org-x-crypto-ssh-terminal)))
+ (home-page "https://github.com/junegunn/fzf")
+ (synopsis "Command-line fuzzy-finder")
+ (description "This package provides an interactive command-line filter
+usable with any list--including files, command history, processes and more.")
+ (license license:expat)))
+
(define-public go-github.com-howeyc-gopass
(let ((commit "bf9dde6d0d2c004a008c27aaee91170c786f6db8")
(revision "0"))
diff --git a/gnu/packages/text-editors.scm b/gnu/packages/text-editors.scm
index b35486ba59..4412d54579 100644
--- a/gnu/packages/text-editors.scm
+++ b/gnu/packages/text-editors.scm
@@ -8,6 +8,7 @@
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2019 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2019 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -35,6 +36,7 @@
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages)
#:use-module (gnu packages assembly)
+ #:use-module (gnu packages autotools)
#:use-module (gnu packages boost)
#:use-module (gnu packages documentation)
#:use-module (gnu packages fontutils)
@@ -50,6 +52,7 @@
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
#:use-module (gnu packages regex)
#:use-module (gnu packages ruby)
@@ -397,15 +400,14 @@ editors.")
(define-public texmacs
(package
(name "texmacs")
- (version "1.99.9")
+ (version "1.99.11")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.texmacs.org/Download/ftp/tmftp/"
"source/TeXmacs-" version "-src.tar.gz"))
(sha256
- (base32
- "0i95sf9y8qpgxd8f39cprbp3s200nm9lml0xdpyn46n838acvw19"))
+ (base32 "12bp0f34izzqimz49lfpgf4lyz3h45s9xbmk8v6zsawdjki76alg"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -421,7 +423,7 @@ editors.")
("python" ,python-wrapper)
("qt" ,qt-4)))
(arguments
- `(#:tests? #f ;no check target
+ `(#:tests? #f ; no check target
#:phases
(modify-phases %standard-phases
(add-before 'configure 'gzip-flags
@@ -437,3 +439,131 @@ types of content. It has robust support for mathematical formulas and plots.
and Octave. TeXmacs is completely extensible via Guile.")
(license license:gpl3+)
(home-page "https://www.texmacs.org/tmweb/home/welcome.en.html")))
+
+(define-public scintilla
+ (package
+ (name "scintilla")
+ (version "4.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (let ((v (apply string-append (string-split version #\.))))
+ (string-append
+ "https://www.scintilla.org/scintilla" v ".tgz")))
+ (sha256
+ (base32
+ "02ymi86fpcypg6423vfr54lbkxbks046q02v3m3dypawcf3bqy42"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:make-flags (list "GTK3=1" "CC=gcc" "-Cgtk")
+ #:tests? #f ;require un-packaged Pyside
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure) ;no configure script
+ (add-after 'unpack 'build-shared-library
+ (lambda _
+ (substitute* "gtk/makefile"
+ (("scintilla\\.a") "libscintilla.so")
+ (("\\$\\(AR\\) \\$\\(ARFLAGS\\) \\$@ \\$\\^")
+ "$(CC) -shared $^ -o $@")
+ (("\\$\\(RANLIB\\) \\$@") ""))
+ #t))
+ (add-before 'build 'expand-C++-include-path
+ (lambda* (#:key inputs #:allow-other-keys)
+ ;; Make <gcc>/include/c++/ext/string_conversions.h find
+ ;; <stdlib.h>.
+ (let* ((path "CPLUS_INCLUDE_PATH")
+ (gcc (assoc-ref inputs "gcc"))
+ (c++ (string-append gcc "/include/c++")))
+ (setenv path (string-append c++ ":" (getenv path))))
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (lib (string-append out "/lib"))
+ (include (string-append out "/include")))
+ (install-file "bin/libscintilla.so" lib)
+ (for-each (lambda (f) (install-file f include))
+ (find-files "include/" "."))
+ #t))))))
+ (native-inputs
+ `(("gcc" ,gcc-7) ;require GCC 7.1+
+ ("pkg-config" ,pkg-config)))
+ (inputs
+ `(("gtk+" ,gtk+)))
+ (home-page "https://www.scintilla.org/")
+ (synopsis "Code editor for GTK+")
+ (description "Scintilla is a source code editing component for
+GTK+. It has the usual features found in text editing components, as
+well as some that are especially useful for editing and debugging
+source code; these include support for syntax styling, error
+indicators, code completion and call tips. Styling choices are more
+open than with many editors: Scintilla lets you use proportional
+fonts, bold and italics, multiple foreground and background colours,
+and multiple fonts.")
+ (license license:hpnd)))
+
+(define-public geany
+ (package
+ (name "geany")
+ (version "1.35")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://download.geany.org/"
+ "geany-" version ".tar.bz2"))
+ (sha256
+ (base32
+ "179xfnvhcxsv54v2mlrhykqv2j7klniln5sffvqqpjmdvwyivvim"))
+ (modules '((guix build utils)))
+ (snippet '(begin
+ (delete-file-recursively "scintilla")
+ #t))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("doxygen" ,doxygen)
+ ("glib" ,glib "bin")
+ ("intltool" ,intltool)
+ ("libtool" ,libtool)
+ ("pkg-config" ,pkg-config)
+ ("python-docutils" ,python-docutils))) ;for rst2html
+ (inputs
+ `(("gtk+" ,gtk+)
+ ("scintilla" ,scintilla)))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'use-scintilla-shared-library
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "configure.ac"
+ (("scintilla/Makefile") "")
+ (("scintilla/include/Makefile") ""))
+ (substitute* "Makefile.am"
+ (("scintilla ") ""))
+ (substitute* "src/Makefile.am"
+ (("\\$\\(top_builddir\\)/scintilla/libscintilla.la") "")
+ (("geany_LDFLAGS =" all) (string-append all " -lscintilla")))
+ (substitute* "doc/Makefile.am"
+ (("\\$\\(INSTALL_DATA\\) \\$\\(top_srcdir\\)/scintilla/License.txt \\$\\(DOCDIR\\)/ScintillaLicense.txt") ""))
+ (for-each delete-file (list "autogen.sh" "configure" "Makefile.in"))
+ #t)))))
+ (home-page "https://www.geany.org")
+ (synopsis "Fast and lightweight IDE")
+ (description "Geany is a small and fast Integrated Development
+Environment (IDE) that only has a few dependencies on other packages and is as
+independent as possible from special desktop environments like KDE or GNOME.
+
+The basic features of Geany are:
+@itemize
+@item syntax highlighting
+@item code completion
+@item auto completion of often constructed constructs like if, for and while
+@item auto completion of XML and HTML tags
+@item call tips
+@item folding
+@item many supported filetypes like C, Java, PHP, HTML, Python, Perl, Pascal
+@item symbol lists
+@item embedded terminal emulation
+@item extensibility through plugins
+@end itemize")
+ (license license:gpl2+)))
diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index d1dc14e6d7..2c520dfbdf 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -693,27 +693,32 @@ and Cython.")
(license license:expat))))
(define-public go-github.com-mattn-go-runewidth
- (package
- (name "go-github.com-mattn-go-runewidth")
- (version "0.0.2")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/mattn/go-runewidth")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0vkrfrz3fzn5n6ix4k8s0cg0b448459sldq8bp4riavsxm932jzb"))))
- (build-system go-build-system)
- (arguments
- '(#:import-path "github.com/mattn/go-runewidth"))
- (synopsis "@code{runewidth} provides Go functions to work with string widths")
- (description
- "The @code{runewidth} library provides Go functions for padding,
-measuring and checking the width of strings, with support east asian text.")
- (home-page "https://github.com/jessevdk/go-flags")
- (license license:expat)))
+ (let ((commit "703b5e6b11ae25aeb2af9ebb5d5fdf8fa2575211")
+ (version "0.0.4")
+ (revision "1"))
+ (package
+ (name "go-github.com-mattn-go-runewidth")
+ (version (git-version version revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/mattn/runewidth")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0znpyz71gajx3g0j2zp63nhjj2c07g16885vxv4ykwnrfmzbgk4w"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/mattn/go-runewidth"))
+ (synopsis "@code{runewidth} provides Go functions to work with string widths")
+ (description
+ "The @code{runewidth} library provides Go functions for padding,
+measuring and checking the width of strings, with support for East Asian
+text.")
+ (home-page "https://github.com/mattn/runewidth")
+ (license license:expat))))
(define-public docx2txt
(package
diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm
index ac85b9595c..20dc69282a 100644
--- a/gnu/packages/tls.scm
+++ b/gnu/packages/tls.scm
@@ -4,7 +4,7 @@
;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net>
;;; Copyright © 2013, 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2015 David Thompson <davet@gnu.org>
-;;; Copyright © 2015, 2016, 2017, 2018 Leo Famulari <leo@famulari.name>
+;;; Copyright © 2015, 2016, 2017, 2018, 2019 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016, 2017, 2019 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016, 2017, 2018 ng0 <ng0@n0.is>
;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
@@ -33,8 +33,10 @@
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix git-download)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system go)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
#:use-module (guix build-system cmake)
@@ -951,3 +953,27 @@ coding footprint.")
ACME-server (currently only provided by Let's Encrypt) implemented as a
relatively simple Bash script.")
(license license:expat)))
+
+(define-public go-github-com-certifi-gocertifi
+ (let ((commit "d2eda712971317d7dd278bc2a52acda7e945f97e")
+ (revision "0"))
+ (package
+ (name "go-github-com-certifi-gocertifi")
+ (version (git-version "2018.01.18" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/certifi/gocertifi")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0f3v26xps7gadw4qfmh1kxbpgp0cgqdd61a257xnnvnd7ll6k8dh"))))
+ (build-system go-build-system)
+ (arguments
+ '(#:import-path "github.com/certifi/gocertifi"))
+ (synopsis "X.509 TLS root certificate bundle for Go")
+ (description "This package is a Go language X.509 TLS root certificate bundle,
+derived from Mozilla's collection.")
+ (home-page "https://certifi.io")
+ (license license:mpl2.0))))
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 2854ae2228..9febda6949 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -753,6 +753,40 @@ entry-points (VLD, IDCT, Motion Compensation etc.) for prevailing coding
standards (MPEG-2, MPEG-4 ASP/H.263, MPEG-4 AVC/H.264, and VC-1/VMW3).")
(license license:expat)))
+(define-public libva-utils
+ (package
+ (name "libva-utils")
+ (version "2.5.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/intel/libva-utils/releases/download/"
+ version "/libva-utils-" version ".tar.bz2"))
+ (sha256
+ (base32 "05rasyqnsg522zqxak1q8rrm1hys7wwbi41kd0szjq0d27awjf4j"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:configure-flags
+ (list "--enable-wayland"
+ "--enable-x11")))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (inputs
+ `(("libdrm" ,libdrm)
+ ("libva" ,libva)
+ ("libx11" ,libx11)
+ ("mesa" ,mesa)
+ ("wayland" ,wayland)))
+ (home-page "https://01.org/linuxmedia/vaapi")
+ (synopsis "Collection of testing utilities for VA-API")
+ (description
+ "This is a collection of utilities to query and test the @acronym{VA-API,
+Video Acceleration API} implemented by the libva library.
+
+These tools require a supported graphics chip, driver, and VA-API back end to
+operate properly.")
+ (license license:expat)))
+
(define-public ffmpeg
(package
(name "ffmpeg")
@@ -1013,7 +1047,7 @@ videoformats depend on the configuration flags of ffmpeg.")
(define-public vlc
(package
(name "vlc")
- (version "3.0.7")
+ (version "3.0.7.1")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1022,7 +1056,7 @@ videoformats depend on the configuration flags of ffmpeg.")
"/vlc-" version ".tar.xz"))
(sha256
(base32
- "05irswyg9acflxzy4vfyvgi643r72vsvagv118zawjqg1wagxdaw"))))
+ "1xb4c8n0hkwijzfdlbwadhxnx9z8rlhmrdq4c7q74rq9f51q0m86"))))
(build-system gnu-build-system)
(native-inputs
`(("flex" ,flex)
@@ -1446,7 +1480,7 @@ access to mpv's powerful playback capabilities.")
(define-public youtube-dl
(package
(name "youtube-dl")
- (version "2019.06.21")
+ (version "2019.08.02")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/rg3/youtube-dl/releases/"
@@ -1454,7 +1488,7 @@ access to mpv's powerful playback capabilities.")
version ".tar.gz"))
(sha256
(base32
- "03a729198zzhixbn7xixi9bprmk3qqh5dsyh3dqhji6lmlijx1w5"))))
+ "101b6jrf6ckbxrn76ppvgdyrb25p7d247kn8qgq7n476sfnkfg2p"))))
(build-system python-build-system)
(arguments
;; The problem here is that the directory for the man page and completion
@@ -1585,7 +1619,7 @@ other site that youtube-dl supports.")
(define-public you-get
(package
(name "you-get")
- (version "0.4.1302")
+ (version "0.4.1328")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -1594,7 +1628,7 @@ other site that youtube-dl supports.")
(file-name (git-file-name name version))
(sha256
(base32
- "1fwwzslv1vpjr8q0fq10dbngr8zai1n3d6na700cgpky4j9y0y99"))))
+ "1r9qffwvxmp74byva12h2jsn3n33vyim052sx9lykv5dygibbp65"))))
(build-system python-build-system)
(inputs
`(("ffmpeg" ,ffmpeg))) ; for multi-part and >=1080p videos
@@ -2695,6 +2729,51 @@ of modern, widely supported codecs.")
;; Combination under GPLv2. See LICENSE.
(license license:gpl2)))
+(define-public intel-vaapi-driver
+ (package
+ (name "intel-vaapi-driver")
+ (version "2.3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/intel/intel-vaapi-driver/"
+ "releases/download/" version "/intel-vaapi-driver-"
+ version ".tar.bz2"))
+ (sha256
+ (base32 "1qyzxh3p8cw4fv8bz9zd4kc8hajlaps7xryzh6pad814n3m5sbjw"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (inputs
+ `(("libdrm" ,libdrm)
+ ("libva" ,libva)
+ ("libx11" ,libx11)))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-before 'configure 'set-target-directory
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (setenv "LIBVA_DRIVERS_PATH" (string-append out "/lib/dri"))
+ #t))))))
+ ;; XXX Because of <https://issues.guix.gnu.org/issue/22138>, we need to add
+ ;; this to all VA-API back ends instead of once to libva.
+ (native-search-paths
+ (list (search-path-specification
+ (variable "LIBVA_DRIVERS_PATH")
+ (files '("lib/dri")))))
+ (supported-systems '("i686-linux" "x86_64-linux"))
+ (home-page "https://01.org/linuxmedia/vaapi")
+ (synopsis "VA-API video acceleration driver for Intel GEN Graphics devices")
+ (description
+ "This is the @acronym{VA-API, Video Acceleration API} back end required for
+hardware-accelerated video processing on Intel GEN Graphics devices supported by
+the i915 driver, such as integrated Intel HD Graphics. It provides access to
+both hardware and shader functionality for faster encoding, decoding, and
+post-processing of video formats like MPEG2, H.264/AVC, and VC-1.")
+ (license (list license:bsd-2 ; src/gen9_vp9_const_def.c
+ license:expat)))) ; the rest, excluding the test suite
+
(define-public openh264
(package
(name "openh264")
diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index c6371a6ac1..7c69f7b60e 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -391,13 +391,15 @@ manage system or application containers.")
(package
(name "libvirt")
(version "5.5.0")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://libvirt.org/sources/libvirt-"
- version ".tar.xz"))
- (sha256
- (base32
- "1s1mzw4cmkcfivs1kphpgy4lpddx0w1qnjysr4ggk5558w4yy1i3"))))
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://libvirt.org/sources/libvirt-"
+ version ".tar.xz"))
+ (sha256
+ (base32 "1s1mzw4cmkcfivs1kphpgy4lpddx0w1qnjysr4ggk5558w4yy1i3"))
+ (patches
+ (search-patches "libvirt-remove-ATTRIBUTE_UNUSED.patch"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index ac6403211c..f2d1f316d4 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -6,7 +6,7 @@
;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2018 Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
-;;; Copyright © 2015, 2016, 2017, 2018 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2015, 2016, 2017, 2018, 2019 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
;;; Copyright © 2016 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2016 Jelle Licht <jlicht@fsfe.org>
@@ -127,6 +127,7 @@
#:use-module (gnu packages tls)
#:use-module (gnu packages valgrind)
#:use-module (gnu packages version-control)
+ #:use-module (gnu packages vim)
#:use-module (gnu packages xml))
(define-public httpd
@@ -205,14 +206,14 @@ Interface} specification.")
;; ’stable’ and recommends that “in general you deploy the NGINX mainline
;; branch at all times” (https://www.nginx.com/blog/nginx-1-6-1-7-released/)
;; Consider updating the nginx-documentation package together with this one.
- (version "1.17.1")
+ (version "1.17.2")
(source (origin
(method url-fetch)
(uri (string-append "https://nginx.org/download/nginx-"
version ".tar.gz"))
(sha256
(base32
- "0gp7cy2bbn8yi1wapjzssf4bhmn4d4vphdb0k1wiaq2fa6s2a63g"))))
+ "1v39gslwbvpfhqqv74q0lkfrhrwsp59xc8pwhvxns7af8s3kccsy"))))
(build-system gnu-build-system)
(inputs `(("openssl" ,openssl)
("pcre" ,pcre)
@@ -4239,15 +4240,15 @@ C. It is developed as part of the NetSurf project.")
(define-public hubbub
(package
(name "hubbub")
- (version "0.3.5")
+ (version "0.3.6")
(source
(origin
(method url-fetch)
(uri (string-append "http://download.netsurf-browser.org/libs/releases/"
- "lib" name "-" version "-src.tar.gz"))
+ "libhubbub-" version "-src.tar.gz"))
(sha256
(base32
- "13yq1k96a7972x4r71i9bcsz9yiglj0yx7lj0ziq5r94w5my70ma"))
+ "1x3v7xvagx85v9h3pypzc86rcxs4mij87mmcqkp8pq50q6awfmnp"))
(patches (search-patches "hubbub-sort-entities.patch"))))
(build-system gnu-build-system)
(native-inputs
@@ -4345,15 +4346,15 @@ commenting.")
(define-public libwapcaplet
(package
(name "libwapcaplet")
- (version "0.4.1")
+ (version "0.4.2")
(source
(origin
(method url-fetch)
(uri (string-append "http://download.netsurf-browser.org/libs/releases/"
- name "-" version "-src.tar.gz"))
+ "libwapcaplet-" version "-src.tar.gz"))
(sha256
(base32
- "134pljlm8kby1yy49826f0ixnpig8iqak6xpyl3aivagnsjnxzy8"))))
+ "1fjwzbn7j8bi1b9bvwxsy3i2cr6byq2s2d29866801pjnf528g86"))))
(build-system gnu-build-system)
(native-inputs
`(("netsurf-buildsystem" ,netsurf-buildsystem)
@@ -4371,15 +4372,15 @@ developed as part of the Netsurf project.")
(define-public libcss
(package
(name "libcss")
- (version "0.8.0")
+ (version "0.9.0")
(source
(origin
(method url-fetch)
(uri (string-append "http://download.netsurf-browser.org/libs/releases/"
- name "-" version "-src.tar.gz"))
+ "libcss-" version "-src.tar.gz"))
(sha256
(base32
- "0pxdqbxn6brj03nv57bsvac5n70k4scn3r5msaw0jgn2k06lk81m"))))
+ "1vw9j3d2mr4wbvs8fyqmgslkbxknvac10456775hflxxcivbm3xr"))))
(build-system gnu-build-system)
(native-inputs
`(("netsurf-buildsystem" ,netsurf-buildsystem)
@@ -4399,15 +4400,15 @@ written in C. It is developed as part of the NetSurf project.")
(define-public libdom
(package
(name "libdom")
- (version "0.3.3")
+ (version "0.4.0")
(source
(origin
(method url-fetch)
(uri (string-append "http://download.netsurf-browser.org/libs/releases/"
- name "-" version "-src.tar.gz"))
+ "libdom-" version "-src.tar.gz"))
(sha256
(base32
- "1919757mdl3gii2pl6kzm8b1cal0h06r5nqd2y0kny6hc5yrhsp0"))))
+ "1ixkqsl3f7dl1kajksm0c231w1v5xy8z6hm3v67hgm9nh4qcvfcy"))))
(build-system gnu-build-system)
(native-inputs
`(("netsurf-buildsystem" ,netsurf-buildsystem)
@@ -4509,6 +4510,34 @@ written in C. It is developed as part of the NetSurf project.")
C. It is developed as part of the NetSurf project.")
(license license:expat)))
+(define-public libnslog
+ (package
+ (name "libnslog")
+ (version "0.1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "http://download.netsurf-browser.org/libs/releases/"
+ "libnslog-" version "-src.tar.gz"))
+ (sha256
+ (base32
+ "1ggs6xvxp8fbg5w8pifalipm458ygr9ab6j2yvj8fnnmxwvdh4jd"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("netsurf-buildsystem" ,netsurf-buildsystem)
+ ("pkg-config" ,pkg-config)
+ ("check" ,check) ;for tests
+ ("bison" ,bison)
+ ("flex" ,flex)))
+ (arguments netsurf-buildsystem-arguments)
+ (home-page "http://www.netsurf-browser.org/")
+ (synopsis "Logging library")
+ (description
+ "Libnslog provides a category-based logging library which supports
+complex logging filters, multiple log levels, and provides context through to
+client applications. It is developed as part of the NetSurf project.")
+ (license license:expat)))
+
(define-public libnsutils
(package
(name "libnsutils")
@@ -4535,15 +4564,15 @@ developed as part of the NetSurf project.")
(define-public libnspsl
(package
(name "libnspsl")
- (version "0.1.3")
+ (version "0.1.5")
(source
(origin
(method url-fetch)
(uri (string-append "http://download.netsurf-browser.org/libs/releases/"
- name "-" version "-src.tar.gz"))
+ "libnspsl-" version "-src.tar.gz"))
(sha256
(base32
- "1rsk1k2a495axxgv8060s0p1phhhcxrv75252kllbkvr8id5kqld"))))
+ "0siq8zjfxv75i9fw6q5hkaijpdm1w3zskd5qk6vsvz8cqan4vifd"))))
(build-system gnu-build-system)
(native-inputs
`(("netsurf-buildsystem" ,netsurf-buildsystem)))
@@ -4558,15 +4587,15 @@ Public Suffix List. It is developed as part of the NetSurf project.")
(define-public nsgenbind
(package
(name "nsgenbind")
- (version "0.6")
+ (version "0.7")
(source
(origin
(method url-fetch)
(uri (string-append "http://download.netsurf-browser.org/libs/releases/"
- name "-" version "-src.tar.gz"))
+ "nsgenbind-" version "-src.tar.gz"))
(sha256
(base32
- "0v1cb1rz5fix9ql31nzmglj7sybya6d12b2fkaypm1avcca59xwj"))))
+ "0rplmky4afsjwiwh7grkmcdmzg86zksa55j93dvq92f91yljwqqq"))))
(build-system gnu-build-system)
(native-inputs
`(("netsurf-buildsystem" ,netsurf-buildsystem)
@@ -4586,7 +4615,7 @@ w3c webidl files and a binding configuration file.")
(define-public netsurf
(package
(name "netsurf")
- (version "3.8")
+ (version "3.9")
(source
(origin
(method url-fetch)
@@ -4594,7 +4623,7 @@ w3c webidl files and a binding configuration file.")
"releases/source/netsurf-" version "-src.tar.gz"))
(sha256
(base32
- "0hjm1h4m1i913y4mhkl7yqdifn8k70fwi58zdh6faypawzryc3m0"))
+ "1hzcm2s2wh5sapgr000lg63hcdbj6hyajxl43xa1x80kc5piqbyp"))
(patches (search-patches "netsurf-system-utf8proc.patch"
"netsurf-y2038-tests.patch"
"netsurf-longer-test-timeout.patch"
@@ -4607,7 +4636,8 @@ w3c webidl files and a binding configuration file.")
("check" ,check)
("perl" ,perl)
("perl-html-parser" ,perl-html-parser)
- ("pkg-config" ,pkg-config)))
+ ("pkg-config" ,pkg-config)
+ ("xxd" ,xxd)))
(inputs
`(("curl" ,curl)
("gtk+" ,gtk+-2)
@@ -4619,6 +4649,7 @@ w3c webidl files and a binding configuration file.")
("libdom" ,libdom)
("libnsbmp" ,libnsbmp)
("libnsgif" ,libnsgif)
+ ("libnslog" ,libnslog)
("libnspsl" ,libnspsl)
("libnsutils" ,libnsutils)
("libsvgtiny" ,libsvgtiny)
@@ -6436,8 +6467,8 @@ compressed JSON header blocks.
(license license:expat)))
(define-public hpcguix-web
- (let ((commit "53e09ea59ec0380b41a4cbda32df8bdb9a10004d")
- (revision "3"))
+ (let ((commit "f39c90b35e99e4122b0866ec4337020d61c81508")
+ (revision "4"))
(package
(name "hpcguix-web")
(version (git-version "0.0.1" revision commit))
@@ -6449,7 +6480,7 @@ compressed JSON header blocks.
(file-name (git-file-name name version))
(sha256
(base32
- "1ah4pn9697vazhbvd45n4b1rrkx2nbhnw384cr0b941q3sz1dfyc"))))
+ "0idzzlwnaymk6hm5q9nh146h5m6vd8acp32vlmzp6qq08mimfkq7"))))
(build-system gnu-build-system)
(arguments
`(#:modules ((guix build gnu-build-system)
@@ -6509,7 +6540,7 @@ compressed JSON header blocks.
(propagated-inputs
`(("guile" ,guile-2.2)
("guile-commonmark" ,guile-commonmark)
- ("guile-json" ,guile-json-1)))
+ ("guile-json" ,guile-json-3)))
(home-page "https://github.com/UMCUGenetics/hpcguix-web")
(synopsis "Web interface for cluster deployments of Guix")
(description "Hpcguix-web provides a web interface to the list of packages
diff --git a/gnu/packages/wine.scm b/gnu/packages/wine.scm
index 62cf225ceb..fd7277a7af 100644
--- a/gnu/packages/wine.scm
+++ b/gnu/packages/wine.scm
@@ -310,7 +310,7 @@ integrate Windows applications into your desktop.")
(define-public wine-staging-patchset-data
(package
(name "wine-staging-patchset-data")
- (version "4.12.1")
+ (version "4.13")
(source
(origin
(method git-fetch)
@@ -320,7 +320,7 @@ integrate Windows applications into your desktop.")
(file-name (git-file-name name version))
(sha256
(base32
- "1bvpvj6vcw2p6vcjm6mw5maarbs4lfw1ix3pj020w4n3kg4nmmc4"))))
+ "0bbwsd2qpjilxpjscqbp78p0gl0awj1yj62g0wvybh4x89fzy8zj"))))
(build-system trivial-build-system)
(native-inputs
`(("bash" ,bash)
@@ -366,7 +366,7 @@ integrate Windows applications into your desktop.")
(file-name (string-append name "-" version ".tar.xz"))
(sha256
(base32
- "09yjfb2k14y11k19lm8dqmb8qwxyhh67d5q1gqv480y64mljvkx0"))))
+ "0rqx8g394aj5q913cd18zsi60sldvxarrp178w6ja0y4rd8l25vr"))))
(inputs `(("autoconf" ,autoconf) ; for autoreconf
("faudio" ,faudio)
("ffmpeg" ,ffmpeg)
@@ -407,10 +407,7 @@ integrate Windows applications into your desktop.")
(script (string-append (assoc-ref %build-inputs
"wine-staging-patchset-data")
"/share/wine-staging/patches/patchinstall.sh")))
- ;; Exclude specific patches that conflict with FAudio.
- (invoke script (string-append "DESTDIR=" ".") "--all" "-W"
- "xaudio2-revert" "-W" "xaudio2_CommitChanges" "-W"
- "xaudio2_7-WMA_support" "-W" "xaudio2_7-CreateFX-FXEcho")
+ (invoke script (string-append "DESTDIR=" ".") "--all")
#t)))
(add-after 'configure 'patch-dlopen-paths
;; Hardcode dlopened sonames to absolute paths.
@@ -487,9 +484,7 @@ integrated into the main branch.")
"wine-staging-patchset-data")
"/share/wine-staging/patches/patchinstall.sh")))
;; Exclude specific patches that conflict with FAudio.
- (invoke script (string-append "DESTDIR=" ".") "--all" "-W"
- "xaudio2-revert" "-W" "xaudio2_CommitChanges" "-W"
- "xaudio2_7-WMA_support" "-W" "xaudio2_7-CreateFX-FXEcho")
+ (invoke script (string-append "DESTDIR=" ".") "--all")
#t)))
(add-after 'install 'copy-wine32-binaries
(lambda* (#:key outputs #:allow-other-keys)
diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index a2a152bec4..0dbd0326c3 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -5988,7 +5988,7 @@ basic eye-candy effects.")
(define-public xpra
(package
(name "xpra")
- (version "2.5.2")
+ (version "2.5.3")
(source
(origin
(method url-fetch)
@@ -5996,7 +5996,7 @@ basic eye-candy effects.")
version ".tar.xz"))
(sha256
(base32
- "1zbh2990crrxp02c554yh30f0s9znm6iiiklkw8vpxrlmdv1z8ks"))))
+ "1ys35lj28903alccks9p055psy1fsk1nxi8ncchvw8bfxkkkvbys"))))
(build-system python-build-system)
(inputs `(("ffmpeg" ,ffmpeg)
("flac" ,flac)
diff --git a/gnu/services/herd.scm b/gnu/services/herd.scm
index 0008746fe9..2207b2d34b 100644
--- a/gnu/services/herd.scm
+++ b/gnu/services/herd.scm
@@ -40,10 +40,12 @@
unknown-shepherd-error?
unknown-shepherd-error-sexp
+ live-service
live-service?
live-service-provision
live-service-requirement
live-service-running
+ live-service-canonical-name
with-shepherd-action
current-services
@@ -192,6 +194,10 @@ of pairs."
(requirement live-service-requirement) ;list of symbols
(running live-service-running)) ;#f | object
+(define (live-service-canonical-name service)
+ "Return the 'canonical name' of SERVICE."
+ (first (live-service-provision service)))
+
(define (current-services)
"Return the list of currently defined Shepherd services, represented as
<live-service> objects. Return #f if the list of services could not be
diff --git a/gnu/tests/reconfigure.scm b/gnu/tests/reconfigure.scm
new file mode 100644
index 0000000000..3a2f0a2e53
--- /dev/null
+++ b/gnu/tests/reconfigure.scm
@@ -0,0 +1,262 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2019 Jakob L. Kreuze <zerodaysfordays@sdf.lonestar.org>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu tests reconfigure)
+ #:use-module (gnu bootloader)
+ #:use-module (gnu services shepherd)
+ #:use-module (gnu system vm)
+ #:use-module (gnu system)
+ #:use-module (gnu tests)
+ #:use-module (guix derivations)
+ #:use-module (guix gexp)
+ #:use-module (guix monads)
+ #:use-module (guix scripts system reconfigure)
+ #:use-module (guix store)
+ #:export (%test-switch-to-system
+ %test-upgrade-services
+ %test-install-bootloader))
+
+;;; Commentary:
+;;;
+;;; Test in-place system reconfiguration: advancing the system generation on a
+;;; running instance of the Guix System.
+;;;
+;;; Code:
+
+(define* (run-switch-to-system-test)
+ "Run a test of an OS running SWITCH-SYSTEM-PROGRAM, which creates a new
+generation of the system profile."
+ (define os
+ (marionette-operating-system
+ (simple-operating-system)
+ #:imported-modules '((gnu services herd)
+ (guix combinators))))
+
+ (define vm (virtual-machine os))
+
+ (define (test script)
+ (with-imported-modules '((gnu build marionette))
+ #~(begin
+ (use-modules (gnu build marionette)
+ (srfi srfi-64))
+
+ (define marionette
+ (make-marionette (list #$vm)))
+
+ ;; Return the names of the generation symlinks on MARIONETTE.
+ (define (system-generations marionette)
+ (marionette-eval
+ '(begin
+ (use-modules (ice-9 ftw)
+ (srfi srfi-1))
+ (let* ((profile-dir "/var/guix/profiles/")
+ (entries (map first (cddr (file-system-tree profile-dir)))))
+ (remove (lambda (entry)
+ (member entry '("per-user" "system")))
+ entries)))
+ marionette))
+
+ (mkdir #$output)
+ (chdir #$output)
+
+ (test-begin "switch-to-system")
+
+ (let ((generations-prior (system-generations marionette)))
+ (test-assert "script successfully evaluated"
+ (marionette-eval
+ '(primitive-load #$script)
+ marionette))
+
+ (test-equal "script created new generation"
+ (length (system-generations marionette))
+ (1+ (length generations-prior))))
+
+ (test-end)
+ (exit (= (test-runner-fail-count (test-runner-current)) 0)))))
+
+ (gexp->derivation "switch-to-system" (test (switch-system-program os))))
+
+(define* (run-upgrade-services-test)
+ "Run a test of an OS running UPGRADE-SERVICES-PROGRAM, which upgrades the
+Shepherd (PID 1) by unloading obsolete services and loading new services."
+ (define os
+ (marionette-operating-system
+ (simple-operating-system)
+ #:imported-modules '((gnu services herd)
+ (guix combinators))))
+
+ (define vm (virtual-machine os))
+
+ (define dummy-service
+ ;; Shepherd service that does nothing, for the sole purpose of ensuring
+ ;; that it is properly installed and started by the script.
+ (shepherd-service (provision '(dummy))
+ (start #~(const #t))
+ (stop #~(const #t))
+ (respawn? #f)))
+
+ ;; Return the Shepherd service file for SERVICE, after ensuring that it
+ ;; exists in the store.
+ (define (ensure-service-file service)
+ (let ((file (shepherd-service-file service)))
+ (mlet* %store-monad ((store-object (lower-object file))
+ (_ (built-derivations (list store-object))))
+ (return file))))
+
+ (define (test enable-dummy disable-dummy)
+ (with-imported-modules '((gnu build marionette))
+ #~(begin
+ (use-modules (gnu build marionette)
+ (srfi srfi-64))
+
+ (define marionette
+ (make-marionette (list #$vm)))
+
+ ;; Return the names of the running services on MARIONETTE.
+ (define (running-services marionette)
+ (marionette-eval
+ '(begin
+ (use-modules (gnu services herd))
+ (map live-service-canonical-name (current-services)))
+ marionette))
+
+ (mkdir #$output)
+ (chdir #$output)
+
+ (test-begin "upgrade-services")
+
+ (let ((services-prior (running-services marionette)))
+ (test-assert "script successfully evaluated"
+ (marionette-eval
+ '(primitive-load #$enable-dummy)
+ marionette))
+
+ (test-assert "script started new service"
+ (and (not (memq 'dummy services-prior))
+ (memq 'dummy (running-services marionette))))
+
+ (test-assert "script successfully evaluated"
+ (marionette-eval
+ '(primitive-load #$disable-dummy)
+ marionette))
+
+ (test-assert "script stopped obsolete service"
+ (not (memq 'dummy (running-services marionette)))))
+
+ (test-end)
+ (exit (= (test-runner-fail-count (test-runner-current)) 0)))))
+
+ (mlet* %store-monad ((file (ensure-service-file dummy-service)))
+ (let ((enable (upgrade-services-program (list file) '(dummy) '() '()))
+ (disable (upgrade-services-program '() '() '(dummy) '())))
+ (gexp->derivation "upgrade-services" (test enable disable)))))
+
+(define* (run-install-bootloader-test)
+ "Run a test of an OS running INSTALL-BOOTLOADER-PROGRAM, which installs a
+bootloader's configuration file."
+ (define os
+ (marionette-operating-system
+ (simple-operating-system)
+ #:imported-modules '((gnu services herd)
+ (guix combinators))))
+
+ (define vm (virtual-machine os))
+
+ (define (test script)
+ (with-imported-modules '((gnu build marionette))
+ #~(begin
+ (use-modules (gnu build marionette)
+ (ice-9 regex)
+ (srfi srfi-1)
+ (srfi srfi-64))
+
+ (define marionette
+ (make-marionette (list #$vm)))
+
+ ;; Return the system generation paths that have GRUB menu entries.
+ (define (generations-in-grub-cfg marionette)
+ (let ((grub-cfg (marionette-eval
+ '(begin
+ (call-with-input-file "/boot/grub/grub.cfg"
+ (lambda (port)
+ (get-string-all port))))
+ marionette)))
+ (map (lambda (parameter)
+ (second (string-split (match:substring parameter) #\=)))
+ (list-matches "system=[^ ]*" grub-cfg))))
+
+ (mkdir #$output)
+ (chdir #$output)
+
+ (test-begin "install-bootloader")
+
+ (test-assert "no prior menu entry for system generation"
+ (not (member #$os (generations-in-grub-cfg marionette))))
+
+ (test-assert "script successfully evaluated"
+ (marionette-eval
+ '(primitive-load #$script)
+ marionette))
+
+ (test-assert "menu entry created for system generation"
+ (member #$os (generations-in-grub-cfg marionette)))
+
+ (test-end)
+ (exit (= (test-runner-fail-count (test-runner-current)) 0)))))
+
+ (let* ((bootloader ((compose bootloader-configuration-bootloader
+ operating-system-bootloader)
+ os))
+ ;; The typical use-case for 'install-bootloader-program' is to read
+ ;; the boot parameters for the existing menu entries on the system,
+ ;; parse them with 'boot-parameters->menu-entry', and pass the
+ ;; results to 'operating-system-bootcfg'. However, to obtain boot
+ ;; parameters, we would need to start the marionette, which we should
+ ;; ideally avoid doing outside of the 'test' G-Expression. Thus, we
+ ;; generate a bootloader configuration for the script as if there
+ ;; were no existing menu entries. In the grand scheme of things, this
+ ;; matters little -- these tests should not make assertions about the
+ ;; behavior of 'operating-system-bootcfg'.
+ (bootcfg (operating-system-bootcfg os '()))
+ (bootcfg-file (bootloader-configuration-file bootloader)))
+ (gexp->derivation
+ "install-bootloader"
+ ;; Due to the read-only nature of the virtual machines used in the system
+ ;; test suite, the bootloader installer script is omitted. 'grub-install'
+ ;; would attempt to write directly to the virtual disk if the
+ ;; installation script were run.
+ (test (install-bootloader-program #f #f bootcfg bootcfg-file #f "/")))))
+
+(define %test-switch-to-system
+ (system-test
+ (name "switch-to-system")
+ (description "Create a new generation of the system profile.")
+ (value (run-switch-to-system-test))))
+
+(define %test-upgrade-services
+ (system-test
+ (name "upgrade-services")
+ (description "Upgrade the Shepherd by unloading obsolete services and
+loading new services.")
+ (value (run-upgrade-services-test))))
+
+(define %test-install-bootloader
+ (system-test
+ (name "install-bootloader")
+ (description "Install a bootloader and its configuration file.")
+ (value (run-install-bootloader-test))))
diff --git a/guix/build/cargo-build-system.scm b/guix/build/cargo-build-system.scm
index f38de16cf7..7d363a18a5 100644
--- a/guix/build/cargo-build-system.scm
+++ b/guix/build/cargo-build-system.scm
@@ -2,6 +2,7 @@
;;; Copyright © 2016 David Craven <david@craven.ch>
;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2019 Ivan Petkov <ivanppetkov@gmail.com>
+;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -39,6 +40,21 @@
;;
;; Code:
+;; TODO: Move this to (guix build cargo-utils). Will cause a full rebuild
+;; of all rust compilers.
+
+(define (generate-all-checksums dir-name)
+ (for-each
+ (lambda (filename)
+ (let* ((dir (dirname filename))
+ (checksum-file (string-append dir "/.cargo-checksum.json")))
+ (when (file-exists? checksum-file) (delete-file checksum-file))
+ (display (string-append
+ "patch-cargo-checksums: generate-checksums for "
+ dir "\n"))
+ (generate-checksums dir)))
+ (find-files dir-name "Cargo.toml$")))
+
(define (manifest-targets)
"Extract all targets from the Cargo.toml manifest"
(let* ((port (open-input-pipe "cargo read-manifest"))
@@ -94,8 +110,7 @@ Cargo.toml file present at its root."
;; so that we can generate any cargo checksums.
;; The --strip-components argument is needed to prevent creating
;; an extra directory within `crate-dir`.
- (invoke "tar" "xvf" path "-C" crate-dir "--strip-components" "1")
- (generate-checksums crate-dir)))))
+ (invoke "tar" "xvf" path "-C" crate-dir "--strip-components" "1")))))
inputs)
;; Configure cargo to actually use this new directory.
@@ -121,6 +136,31 @@ directory = '" port)
(setenv "CC" (string-append (assoc-ref inputs "gcc") "/bin/gcc"))
#t)
+;; The Cargo.lock file tells the build system which crates are required for
+;; building and hardcodes their version and checksum. In order to build with
+;; the inputs we provide, we need to recreate the file with our inputs.
+(define* (update-cargo-lock #:key
+ (vendor-dir "guix-vendor")
+ #:allow-other-keys)
+ "Regenerate the Cargo.lock file with the current build inputs."
+ (when (file-exists? "Cargo.lock")
+ (begin
+ ;; Unfortunately we can't generate a Cargo.lock file until the checksums
+ ;; are generated, so we have an extra round of generate-all-checksums here.
+ (generate-all-checksums vendor-dir)
+ (delete-file "Cargo.lock")
+ (invoke "cargo" "generate-lockfile")))
+ #t)
+
+;; After the 'patch-generated-file-shebangs phase any vendored crates who have
+;; their shebangs patched will have a mismatch on their checksum.
+(define* (patch-cargo-checksums #:key
+ (vendor-dir "guix-vendor")
+ #:allow-other-keys)
+ "Patch the checksums of the vendored crates after patching their shebangs."
+ (generate-all-checksums vendor-dir)
+ #t)
+
(define* (build #:key
skip-build?
(cargo-build-flags '("--release"))
@@ -162,7 +202,9 @@ directory = '" port)
(replace 'configure configure)
(replace 'build build)
(replace 'check check)
- (replace 'install install)))
+ (replace 'install install)
+ (add-after 'configure 'update-cargo-lock update-cargo-lock)
+ (add-after 'patch-generated-file-shebangs 'patch-cargo-checksums patch-cargo-checksums)))
(define* (cargo-build #:key inputs (phases %standard-phases)
#:allow-other-keys #:rest args)
diff --git a/guix/build/go-build-system.scm b/guix/build/go-build-system.scm
index 858068ba98..3dac43c18a 100644
--- a/guix/build/go-build-system.scm
+++ b/guix/build/go-build-system.scm
@@ -135,6 +135,9 @@ of the package being built and its dependencies, and GOBIN, which determines
where executables (\"commands\") are installed to. This phase is sometimes used
by packages that use (guix build-system gnu) but have a handful of Go
dependencies, so it should be self-contained."
+ ;; The Go cache is required starting in Go 1.12. We don't actually use it but
+ ;; we need it to be a writable directory.
+ (setenv "GOCACHE" "/tmp/go-cache")
;; Using the current working directory as GOPATH makes it easier for packagers
;; who need to manipulate the unpacked source code.
(setenv "GOPATH" (getcwd))
diff --git a/guix/discovery.scm b/guix/discovery.scm
index 468b6c59de..7c5fed7f0e 100644
--- a/guix/discovery.scm
+++ b/guix/discovery.scm
@@ -51,13 +51,15 @@ DIRECTORY is not accessible."
((? symbol? type)
type)))
+ (define (dot-prefixed? file)
+ (string-prefix? "." file))
+
;; Use 'scandir*' so we can avoid an extra 'lstat' for each entry, as
;; opposed to Guile's 'scandir' or 'file-system-fold'.
(fold-right (lambda (entry result)
(match entry
- (("." . _)
- result)
- ((".." . _)
+ (((? dot-prefixed?) . _)
+ ;; Exclude ".", "..", and hidden files such as backups.
result)
((name . properties)
(let ((absolute (string-append directory "/" name)))
diff --git a/guix/gexp.scm b/guix/gexp.scm
index eef308b000..45cd5869f7 100644
--- a/guix/gexp.scm
+++ b/guix/gexp.scm
@@ -427,7 +427,9 @@ This is the declarative counterpart of 'gexp->script'."
(($ <program-file> name gexp guile module-path)
(gexp->script name gexp
#:module-path module-path
- #:guile (or guile (default-guile))))))
+ #:guile (or guile (default-guile))
+ #:system system
+ #:target target))))
(define-record-type <scheme-file>
(%scheme-file name gexp splice?)
@@ -1345,6 +1347,7 @@ last one is created from the given <scheme-file> object."
(define* (compiled-modules modules
#:key (name "module-import-compiled")
(system (%current-system))
+ target
(guile (%guile-for-build))
(module-path %load-path)
(extensions '())
@@ -1355,7 +1358,8 @@ last one is created from the given <scheme-file> object."
(pre-load-modules? #t))
"Return a derivation that builds a tree containing the `.go' files
corresponding to MODULES. All the MODULES are built in a context where
-they can refer to each other."
+they can refer to each other. When TARGET is true, cross-compile MODULES for
+TARGET, a GNU triplet."
(define total (length modules))
(mlet %store-monad ((modules (imported-modules modules
@@ -1374,6 +1378,12 @@ they can refer to each other."
(srfi srfi-26)
(system base compile))
+ ;; TODO: Inline this on the next rebuild cycle.
+ (ungexp-splicing
+ (if target
+ (gexp ((use-modules (system base target))))
+ (gexp ())))
+
(define (regular? file)
(not (member file '("." ".."))))
@@ -1391,9 +1401,19 @@ they can refer to each other."
(gexp ()))))
(ungexp (* total (if pre-load-modules? 2 1)))
entry)
- (compile-file entry
- #:output-file output
- #:opts %auto-compilation-options)
+
+ (ungexp-splicing
+ (if target
+ (gexp ((with-target (ungexp target)
+ (lambda ()
+ (compile-file entry
+ #:output-file output
+ #:opts
+ %auto-compilation-options)))))
+ (gexp ((compile-file entry
+ #:output-file output
+ #:opts %auto-compilation-options)))))
+
(+ 1 processed))))
(define (process-directory directory output processed)
@@ -1494,7 +1514,7 @@ they can refer to each other."
'guile-2.2))
(define* (load-path-expression modules #:optional (path %load-path)
- #:key (extensions '()))
+ #:key (extensions '()) system target)
"Return as a monadic value a gexp that sets '%load-path' and
'%load-compiled-path' to point to MODULES, a list of module names. MODULES
are searched for in PATH. Return #f when MODULES and EXTENSIONS are empty."
@@ -1502,10 +1522,13 @@ are searched for in PATH. Return #f when MODULES and EXTENSIONS are empty."
(with-monad %store-monad
(return #f))
(mlet %store-monad ((modules (imported-modules modules
- #:module-path path))
+ #:module-path path
+ #:system system))
(compiled (compiled-modules modules
#:extensions extensions
- #:module-path path)))
+ #:module-path path
+ #:system system
+ #:target target)))
(return (gexp (eval-when (expand load eval)
(set! %load-path
(cons (ungexp modules)
@@ -1527,14 +1550,18 @@ are searched for in PATH. Return #f when MODULES and EXTENSIONS are empty."
(define* (gexp->script name exp
#:key (guile (default-guile))
- (module-path %load-path))
+ (module-path %load-path)
+ (system (%current-system))
+ target)
"Return an executable script NAME that runs EXP using GUILE, with EXP's
imported modules in its search path. Look up EXP's modules in MODULE-PATH."
(mlet %store-monad ((set-load-path
(load-path-expression (gexp-modules exp)
module-path
#:extensions
- (gexp-extensions exp))))
+ (gexp-extensions exp)
+ #:system system
+ #:target target)))
(gexp->derivation name
(gexp
(call-with-output-file (ungexp output)
@@ -1554,6 +1581,8 @@ imported modules in its search path. Look up EXP's modules in MODULE-PATH."
(write '(ungexp exp) port)
(chmod port #o555))))
+ #:system system
+ #:target target
#:module-path module-path)))
(define* (gexp->file name exp #:key
diff --git a/guix/git.scm b/guix/git.scm
index 289537dedf..de98fed40c 100644
--- a/guix/git.scm
+++ b/guix/git.scm
@@ -139,29 +139,44 @@ of SHA1 string."
"Switch to REPOSITORY's branch, commit or tag specified by REF. Return the
OID (roughly the commit hash) corresponding to REF."
(define obj
- (match ref
- (('branch . branch)
- (let ((oid (reference-target
- (branch-lookup repository branch BRANCH-REMOTE))))
- (object-lookup repository oid)))
- (('commit . commit)
- (let ((len (string-length commit)))
- ;; 'object-lookup-prefix' appeared in Guile-Git in Mar. 2018, so we
- ;; can't be sure it's available. Furthermore, 'string->oid' used to
- ;; read out-of-bounds when passed a string shorter than 40 chars,
- ;; which is why we delay calls to it below.
- (if (< len 40)
- (if (module-defined? (resolve-interface '(git object))
- 'object-lookup-prefix)
- (object-lookup-prefix repository (string->oid commit) len)
- (raise (condition
- (&message
- (message "long Git object ID is required")))))
- (object-lookup repository (string->oid commit)))))
- (('tag . tag)
- (let ((oid (reference-name->oid repository
- (string-append "refs/tags/" tag))))
- (object-lookup repository oid)))))
+ (let resolve ((ref ref))
+ (match ref
+ (('branch . branch)
+ (let ((oid (reference-target
+ (branch-lookup repository branch BRANCH-REMOTE))))
+ (object-lookup repository oid)))
+ (('commit . commit)
+ (let ((len (string-length commit)))
+ ;; 'object-lookup-prefix' appeared in Guile-Git in Mar. 2018, so we
+ ;; can't be sure it's available. Furthermore, 'string->oid' used to
+ ;; read out-of-bounds when passed a string shorter than 40 chars,
+ ;; which is why we delay calls to it below.
+ (if (< len 40)
+ (if (module-defined? (resolve-interface '(git object))
+ 'object-lookup-prefix)
+ (object-lookup-prefix repository (string->oid commit) len)
+ (raise (condition
+ (&message
+ (message "long Git object ID is required")))))
+ (object-lookup repository (string->oid commit)))))
+ (('tag-or-commit . str)
+ (if (or (> (string-length str) 40)
+ (not (string-every char-set:hex-digit str)))
+ (resolve `(tag . ,str)) ;definitely a tag
+ (catch 'git-error
+ (lambda ()
+ (resolve `(tag . ,str)))
+ (lambda _
+ ;; There's no such tag, so it must be a commit ID.
+ (resolve `(commit . ,str))))))
+ (('tag . tag)
+ (let ((oid (reference-name->oid repository
+ (string-append "refs/tags/" tag))))
+ ;; Get the commit that the tag at OID refers to. This is not
+ ;; strictly needed, but it's more consistent to always return the
+ ;; OID of a commit.
+ (object-lookup repository
+ (tag-target-id (tag-lookup repository oid))))))))
(reset repository obj RESET_HARD)
(object-id obj))
@@ -218,8 +233,8 @@ please upgrade Guile-Git.~%"))))
values: the cache directory name, and the SHA1 commit (a string) corresponding
to REF.
-REF is pair whose key is [branch | commit | tag] and value the associated
-data, respectively [<branch name> | <sha1> | <tag name>].
+REF is pair whose key is [branch | commit | tag | tag-or-commit ] and value
+the associated data: [<branch name> | <sha1> | <tag name> | <string>].
When RECURSIVE? is true, check out submodules as well, if any."
(define canonical-ref
@@ -319,7 +334,7 @@ Log progress and checkout info to LOG-PORT."
git-checkout?
(url git-checkout-url)
(branch git-checkout-branch (default "master"))
- (commit git-checkout-commit (default #f))
+ (commit git-checkout-commit (default #f)) ;#f | tag | commit
(recursive? git-checkout-recursive? (default #f)))
(define* (latest-repository-commit* url #:key ref recursive? log-port)
@@ -358,7 +373,7 @@ Log progress and checkout info to LOG-PORT."
(($ <git-checkout> url branch commit recursive?)
(latest-repository-commit* url
#:ref (if commit
- `(commit . ,commit)
+ `(tag-or-commit . ,commit)
`(branch . ,branch))
#:recursive? recursive?
#:log-port (current-error-port)))))
diff --git a/guix/scripts/build.scm b/guix/scripts/build.scm
index ec58ba871b..3ee0b737fe 100644
--- a/guix/scripts/build.scm
+++ b/guix/scripts/build.scm
@@ -341,10 +341,15 @@ strings like \"guile-next=cabba9e\" meaning that packages are built using
(define (replace old url commit)
(package
(inherit old)
- (version (string-append "git."
- (if (< (string-length commit) 7)
- commit
- (string-take commit 7))))
+ (version (if (and (> (string-length commit) 1)
+ (string-prefix? "v" commit)
+ (char-set-contains? char-set:digit
+ (string-ref commit 1)))
+ (string-drop commit 1) ;looks like a tag like "v1.0"
+ (string-append "git."
+ (if (< (string-length commit) 7)
+ commit
+ (string-take commit 7)))))
(source (git-checkout (url url) (commit commit)
(recursive? #t)))))
diff --git a/guix/scripts/system.scm b/guix/scripts/system.scm
index 67a4071684..9fc3a10e98 100644
--- a/guix/scripts/system.scm
+++ b/guix/scripts/system.scm
@@ -41,6 +41,7 @@
delete-matching-generations)
#:use-module (guix graph)
#:use-module (guix scripts graph)
+ #:use-module (guix scripts system reconfigure)
#:use-module (guix build utils)
#:use-module (guix progress)
#:use-module ((guix build syscalls) #:select (terminal-columns))
@@ -178,43 +179,9 @@ TARGET, and register them."
(return *unspecified*)))
-(define* (install-bootloader installer
- #:key
- bootcfg bootcfg-file
- target)
- "Run INSTALLER, a bootloader installation script, with error handling, in
-%STORE-MONAD."
- (mlet %store-monad ((installer-drv (if installer
- (lower-object installer)
- (return #f)))
- (bootcfg (lower-object bootcfg)))
- (let* ((gc-root (string-append target %gc-roots-directory
- "/bootcfg"))
- (temp-gc-root (string-append gc-root ".new"))
- (install (and installer-drv
- (derivation->output-path installer-drv)))
- (bootcfg (derivation->output-path bootcfg)))
- ;; Prepare the symlink to bootloader config file to make sure that it's
- ;; a GC root when 'installer-drv' completes (being a bit paranoid.)
- (switch-symlinks temp-gc-root bootcfg)
-
- (unless (false-if-exception
- (begin
- (install-boot-config bootcfg bootcfg-file target)
- (when install
- (save-load-path-excursion (primitive-load install)))))
- (delete-file temp-gc-root)
- (leave (G_ "failed to install bootloader ~a~%") install))
-
- ;; Register bootloader config file as a GC root so that its dependencies
- ;; (background image, font, etc.) are not reclaimed.
- (rename-file temp-gc-root gc-root)
- (return #t))))
-
(define* (install os-drv target
#:key (log-port (current-output-port))
- bootloader-installer install-bootloader?
- bootcfg bootcfg-file)
+ install-bootloader? bootloader bootcfg)
"Copy the closure of BOOTCFG, which includes the output of OS-DRV, to
directory TARGET. TARGET must be an absolute directory name since that's what
'register-path' expects.
@@ -265,10 +232,11 @@ the ownership of '~a' may be incorrect!~%")
(populate os-dir target)
(mwhen install-bootloader?
- (install-bootloader bootloader-installer
- #:bootcfg bootcfg
- #:bootcfg-file bootcfg-file
- #:target target))))))
+ (install-bootloader local-eval bootloader bootcfg
+ #:target target)
+ (return
+ (info (G_ "bootloader successfully installed on '~a'~%")
+ (bootloader-configuration-target bootloader))))))))
;;;
@@ -335,82 +303,6 @@ unload."
(warning (G_ "failed to obtain list of shepherd services~%"))
(return #f)))))
-(define (upgrade-shepherd-services os)
- "Upgrade the Shepherd (PID 1) by unloading obsolete services and loading new
-services specified in OS and not currently running.
-
-This is currently very conservative in that it does not stop or unload any
-running service. Unloading or stopping the wrong service ('udev', say) could
-bring the system down."
- (define new-services
- (service-value
- (fold-services (operating-system-services os)
- #:target-type shepherd-root-service-type)))
-
- ;; Arrange to simply emit a warning if the service upgrade fails.
- (with-shepherd-error-handling
- (call-with-service-upgrade-info new-services
- (lambda (to-restart to-unload)
- (for-each (lambda (unload)
- (info (G_ "unloading service '~a'...~%") unload)
- (unload-service unload))
- to-unload)
-
- (with-monad %store-monad
- (munless (null? new-services)
- (let ((new-service-names (map shepherd-service-canonical-name new-services))
- (to-restart-names (map shepherd-service-canonical-name to-restart))
- (to-start (filter shepherd-service-auto-start? new-services)))
- (info (G_ "loading new services:~{ ~a~}...~%") new-service-names)
- (unless (null? to-restart-names)
- ;; Listing TO-RESTART-NAMES in the message below wouldn't help
- ;; because many essential services cannot be meaningfully
- ;; restarted. See <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=22039#30>.
- (format #t (G_ "To complete the upgrade, run 'herd restart SERVICE' to stop,
-upgrade, and restart each service that was not automatically restarted.\n")))
- (mlet %store-monad ((files (mapm %store-monad
- (compose lower-object
- shepherd-service-file)
- new-services)))
- ;; Here we assume that FILES are exactly those that were computed
- ;; as part of the derivation that built OS, which is normally the
- ;; case.
- (load-services/safe (map derivation->output-path files))
-
- (for-each start-service
- (map shepherd-service-canonical-name to-start))
- (return #t)))))))))
-
-(define* (switch-to-system os
- #:optional (profile %system-profile))
- "Make a new generation of PROFILE pointing to the directory of OS, switch to
-it atomically, and then run OS's activation script."
- (mlet* %store-monad ((drv (operating-system-derivation os))
- (script (lower-object (operating-system-activation-script os))))
- (let* ((system (derivation->output-path drv))
- (number (+ 1 (generation-number profile)))
- (generation (generation-file-name profile number)))
- (switch-symlinks generation system)
- (switch-symlinks profile generation)
-
- (format #t (G_ "activating system...~%"))
-
- ;; The activation script may change $PATH, among others, so protect
- ;; against that.
- (save-environment-excursion
- ;; Tell 'activate-current-system' what the new system is.
- (setenv "GUIX_NEW_SYSTEM" system)
-
- ;; The activation script may modify '%load-path' & co., so protect
- ;; against that. This is necessary to ensure that
- ;; 'upgrade-shepherd-services' gets to see the right modules when it
- ;; computes derivations with 'gexp->derivation'.
- (save-load-path-excursion
- (primitive-load (derivation->output-path script))))
-
- ;; Finally, try to update system services.
- (upgrade-shepherd-services os))))
-
(define-syntax-rule (unless-file-not-found exp)
(catch 'system-error
(lambda ()
@@ -505,18 +397,13 @@ STORE is an open connection to the store."
((bootloader-configuration-file-generator bootloader)
bootloader-config entries
#:old-entries old-entries)))
- (bootcfg-file -> (bootloader-configuration-file bootloader))
- (target -> "/")
(drvs -> (list bootcfg)))
(mbegin %store-monad
(show-what-to-build* drvs)
(built-derivations drvs)
- ;; Only install bootloader configuration file. Thus, no installer is
- ;; provided here.
- (install-bootloader #f
- #:bootcfg bootcfg
- #:bootcfg-file bootcfg-file
- #:target target))))))
+ ;; Only install bootloader configuration file.
+ (install-bootloader local-eval bootloader-config bootcfg
+ #:run-installer? #f))))))
;;;
@@ -820,8 +707,17 @@ and TARGET arguments."
(condition-message c))
(exit 1)))
(#$installer #$bootloader #$device #$target)
- (format #t "bootloader successfully installed on '~a'~%"
- #$device))))))
+ (info (G_ "bootloader successfully installed on '~a'~%")
+ #$device))))))
+
+(define (local-eval exp)
+ "Evaluate EXP, a G-Expression, in-place."
+ (mlet* %store-monad ((lowered (lower-gexp exp))
+ (_ (built-derivations (lowered-gexp-inputs lowered))))
+ (save-load-path-excursion
+ (set! %load-path (lowered-gexp-load-path lowered))
+ (set! %load-compiled-path (lowered-gexp-load-compiled-path lowered))
+ (return (primitive-eval (lowered-gexp-sexp lowered))))))
(define* (perform-action action os
#:key skip-safety-checks?
@@ -858,19 +754,12 @@ static checks."
(map boot-parameters->menu-entry (profile-boot-parameters))))
(define bootloader
- (bootloader-configuration-bootloader (operating-system-bootloader os)))
+ (operating-system-bootloader os))
(define bootcfg
(and (memq action '(init reconfigure))
(operating-system-bootcfg os menu-entries)))
- (define bootloader-script
- (let ((installer (bootloader-installer bootloader))
- (target (or target "/")))
- (bootloader-installer-script installer
- (bootloader-package bootloader)
- bootloader-target target)))
-
(when (eq? action 'reconfigure)
(maybe-suggest-running-guix-pull))
@@ -897,9 +786,7 @@ static checks."
;; See <http://bugs.gnu.org/21068>.
(drvs (mapm %store-monad lower-object
(if (memq action '(init reconfigure))
- (if install-bootloader?
- (list sys bootcfg bootloader-script)
- (list sys bootcfg))
+ (list sys bootcfg)
(list sys))))
(% (if derivations-only?
(return (for-each (compose println derivation-file-name)
@@ -909,28 +796,32 @@ static checks."
(if (or dry-run? derivations-only?)
(return #f)
- (let ((bootcfg-file (bootloader-configuration-file bootloader)))
+ (begin
(for-each (compose println derivation->output-path)
drvs)
(case action
((reconfigure)
+ (newline)
+ (format #t (G_ "activating system...~%"))
(mbegin %store-monad
- (switch-to-system os)
+ (switch-to-system local-eval os)
(mwhen install-bootloader?
- (install-bootloader bootloader-script
- #:bootcfg bootcfg
- #:bootcfg-file bootcfg-file
- #:target "/"))))
+ (install-bootloader local-eval bootloader bootcfg
+ #:target (or target "/"))
+ (return
+ (info (G_ "bootloader successfully installed on '~a'~%")
+ (bootloader-configuration-target bootloader))))
+ (with-shepherd-error-handling
+ (upgrade-shepherd-services local-eval os))))
((init)
(newline)
(format #t (G_ "initializing operating system under '~a'...~%")
target)
(install sys (canonicalize-path target)
#:install-bootloader? install-bootloader?
- #:bootcfg bootcfg
- #:bootcfg-file bootcfg-file
- #:bootloader-installer bootloader-script))
+ #:bootloader bootloader
+ #:bootcfg bootcfg))
(else
;; All we had to do was to build SYS and maybe register an
;; indirect GC root.
diff --git a/guix/scripts/system/reconfigure.scm b/guix/scripts/system/reconfigure.scm
new file mode 100644
index 0000000000..dee0c24bd2
--- /dev/null
+++ b/guix/scripts/system/reconfigure.scm
@@ -0,0 +1,232 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2016 Alex Kost <alezost@gmail.com>
+;;; Copyright © 2016, 2017, 2018 Chris Marusich <cmmarusich@gmail.com>
+;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
+;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2019 Christopher Baines <mail@cbaines.net>
+;;; Copyright © 2019 Jakob L. Kreuze <zerodaysfordays@sdf.lonestar.org>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (guix scripts system reconfigure)
+ #:autoload (gnu packages gnupg) (guile-gcrypt)
+ #:use-module (gnu bootloader)
+ #:use-module (gnu services)
+ #:use-module (gnu services herd)
+ #:use-module (gnu services shepherd)
+ #:use-module (gnu system)
+ #:use-module (guix gexp)
+ #:use-module (guix modules)
+ #:use-module (guix monads)
+ #:use-module (guix store)
+ #:use-module (ice-9 match)
+ #:use-module (srfi srfi-1)
+ #:use-module (srfi srfi-11)
+ #:export (switch-system-program
+ switch-to-system
+
+ upgrade-services-program
+ upgrade-shepherd-services
+
+ install-bootloader-program
+ install-bootloader))
+
+;;; Commentary:
+;;;
+;;; This module implements the "effectful" parts of system
+;;; reconfiguration. Although building a system derivation is a pure
+;;; operation, a number of impure operations must be carried out for the
+;;; system configuration to be realized -- chiefly, creation of generation
+;;; symlinks and invocation of activation scripts.
+;;;
+;;; Code:
+
+
+;;;
+;;; Profile creation.
+;;;
+
+(define* (switch-system-program os #:optional profile)
+ "Return an executable store item that, upon being evaluated, will create a
+new generation of PROFILE pointing to the directory of OS, switch to it
+atomically, and run OS's activation script."
+ (program-file
+ "switch-to-system.scm"
+ (with-extensions (list guile-gcrypt)
+ (with-imported-modules (source-module-closure '((guix config)
+ (guix profiles)
+ (guix utils)))
+ #~(begin
+ (use-modules (guix config)
+ (guix profiles)
+ (guix utils))
+
+ (define profile
+ (or #$profile (string-append %state-directory "/profiles/system")))
+
+ (let* ((number (1+ (generation-number profile)))
+ (generation (generation-file-name profile number)))
+ (switch-symlinks generation #$os)
+ (switch-symlinks profile generation)
+ (setenv "GUIX_NEW_SYSTEM" #$os)
+ (primitive-load #$(operating-system-activation-script os))))))))
+
+(define* (switch-to-system eval os #:optional profile)
+ "Using EVAL, a monadic procedure taking a single G-Expression as an argument,
+create a new generation of PROFILE pointing to the directory of OS, switch to
+it atomically, and run OS's activation script."
+ (eval #~(primitive-load #$(switch-system-program os profile))))
+
+
+;;;
+;;; Services.
+;;;
+
+(define (running-services eval)
+ "Using EVAL, a monadic procedure taking a single G-Expression as an argument,
+return the <live-service> objects that are currently running on MACHINE."
+ (define exp
+ (with-imported-modules '((gnu services herd))
+ #~(begin
+ (use-modules (gnu services herd))
+ (let ((services (current-services)))
+ (and services
+ ;; 'live-service-running' is ignored, as we can't necessarily
+ ;; serialize arbitrary objects. This should be fine for now,
+ ;; since 'machine-current-services' is not exposed publicly,
+ ;; and the resultant <live-service> objects are only used for
+ ;; resolving service dependencies.
+ (map (lambda (service)
+ (list (live-service-provision service)
+ (live-service-requirement service)))
+ services))))))
+ (mlet %store-monad ((services (eval exp)))
+ (return (map (match-lambda
+ ((provision requirement)
+ (live-service provision requirement #f)))
+ services))))
+
+;; XXX: Currently, this does NOT attempt to restart running services. See
+;; <https://issues.guix.info/issue/33508> for details.
+(define (upgrade-services-program service-files to-start to-unload to-restart)
+ "Return an executable store item that, upon being evaluated, will upgrade
+the Shepherd (PID 1) by unloading obsolete services and loading new
+services. SERVICE-FILES is a list of Shepherd service files to load, and
+TO-START, TO-UNLOAD, and TO-RESTART are lists of the Shepherd services'
+canonical names (symbols)."
+ (program-file
+ "upgrade-shepherd-services.scm"
+ (with-imported-modules '((gnu services herd))
+ #~(begin
+ (use-modules (gnu services herd)
+ (srfi srfi-1))
+
+ ;; Load the service files for any new services.
+ (load-services/safe '#$service-files)
+
+ ;; Unload obsolete services and start new services.
+ (for-each unload-service '#$to-unload)
+ (for-each start-service '#$to-start)))))
+
+(define* (upgrade-shepherd-services eval os)
+ "Using EVAL, a monadic procedure taking a single G-Expression as an argument,
+upgrade the Shepherd (PID 1) by unloading obsolete services and loading new
+services as defined by OS."
+ (define target-services
+ (service-value
+ (fold-services (operating-system-services os)
+ #:target-type shepherd-root-service-type)))
+
+ (mlet* %store-monad ((live-services (running-services eval)))
+ (let*-values (((to-unload to-restart)
+ (shepherd-service-upgrade live-services target-services)))
+ (let* ((to-unload (map live-service-canonical-name to-unload))
+ (to-restart (map shepherd-service-canonical-name to-restart))
+ (to-start (lset-difference eqv?
+ (map shepherd-service-canonical-name
+ target-services)
+ (map live-service-canonical-name
+ live-services)))
+ (service-files (map shepherd-service-file target-services)))
+ (eval #~(primitive-load #$(upgrade-services-program service-files
+ to-start
+ to-unload
+ to-restart)))))))
+
+
+;;;
+;;; Bootloader configuration.
+;;;
+
+(define (install-bootloader-program installer bootloader-package bootcfg
+ bootcfg-file device target)
+ "Return an executable store item that, upon being evaluated, will install
+BOOTCFG to BOOTCFG-FILE, a target file name, on DEVICE, a file system device,
+at TARGET, a mount point, and subsequently run INSTALLER from
+BOOTLOADER-PACKAGE."
+ (program-file
+ "install-bootloader.scm"
+ (with-extensions (list guile-gcrypt)
+ (with-imported-modules (source-module-closure '((gnu build bootloader)
+ (gnu build install)
+ (guix store)
+ (guix utils)))
+ #~(begin
+ (use-modules (gnu build bootloader)
+ (gnu build install)
+ (guix build utils)
+ (guix store)
+ (guix utils)
+ (ice-9 binary-ports)
+ (srfi srfi-34)
+ (srfi srfi-35))
+ (let* ((gc-root (string-append #$target %gc-roots-directory "/bootcfg"))
+ (temp-gc-root (string-append gc-root ".new")))
+ (switch-symlinks temp-gc-root gc-root)
+ (install-boot-config #$bootcfg #$bootcfg-file #$target)
+ ;; Preserve the previous activation's garbage collector root
+ ;; until the bootloader installer has run, so that a failure in
+ ;; the bootloader's installer script doesn't leave the user with
+ ;; a broken installation.
+ (when #$installer
+ (catch #t
+ (lambda ()
+ (#$installer #$bootloader-package #$device #$target))
+ (lambda args
+ (delete-file temp-gc-root)
+ (apply throw args))))
+ (rename-file temp-gc-root gc-root)))))))
+
+(define* (install-bootloader eval configuration bootcfg
+ #:key
+ (run-installer? #t)
+ (target "/"))
+ "Using EVAL, a monadic procedure taking a single G-Expression as an argument,
+configure the bootloader on TARGET such that OS will be booted by default and
+additional configurations specified by MENU-ENTRIES can be selected."
+ (let* ((bootloader (bootloader-configuration-bootloader configuration))
+ (installer (and run-installer?
+ (bootloader-installer bootloader)))
+ (package (bootloader-package bootloader))
+ (device (bootloader-configuration-target configuration))
+ (bootcfg-file (bootloader-configuration-file bootloader)))
+ (eval #~(primitive-load #$(install-bootloader-program installer
+ package
+ bootcfg
+ bootcfg-file
+ device
+ target)))))
diff --git a/tests/gexp.scm b/tests/gexp.scm
index 460afe7f59..5c013d838d 100644
--- a/tests/gexp.scm
+++ b/tests/gexp.scm
@@ -1104,6 +1104,25 @@
(return (and (zero? (close-pipe pipe))
(= 42 (string->number str)))))))))
+(test-assertm "program-file #:system"
+ (let* ((exp (with-imported-modules '((guix build utils))
+ (gexp (begin
+ (use-modules (guix build utils))
+ (display "hi!")))))
+ (system (if (string=? (%current-system) "x86_64-linux")
+ "armhf-linux"
+ "x86_64-linux"))
+ (file (program-file "program" exp)))
+ (mlet %store-monad ((drv (lower-object file system)))
+ (return (and (string=? (derivation-system drv) system)
+ (find (lambda (input)
+ (let ((drv (pk (derivation-input-derivation input))))
+ (and (string=? (derivation-name drv)
+ "module-import-compiled")
+ (string=? (derivation-system drv)
+ system))))
+ (derivation-inputs drv)))))))
+
(test-assertm "scheme-file"
(let* ((text (plain-file "foo" "Hello, world!"))
(scheme (scheme-file "bar" #~(list "foo" #$text))))
diff --git a/tests/guix-build-branch.sh b/tests/guix-build-branch.sh
index e64782c831..3d2a7dddf5 100644
--- a/tests/guix-build-branch.sh
+++ b/tests/guix-build-branch.sh
@@ -1,5 +1,5 @@
# GNU Guix --- Functional package management for GNU
-# Copyright © 2018 Ludovic Courtès <ludo@gnu.org>
+# Copyright © 2018, 2019 Ludovic Courtès <ludo@gnu.org>
#
# This file is part of GNU Guix.
#
@@ -52,5 +52,11 @@ guix gc -R "$v0_1_0_drv" | grep guile-gcrypt-git.9e3eacd
test "$v0_1_0_drv" != "$latest_drv"
test "$v0_1_0_drv" != "$orig_drv"
+v0_1_0_drv="`guix build guix --with-commit=guile-gcrypt=v0.1.0 -d`"
+guix gc -R "$v0_1_0_drv" | grep guile-gcrypt-git.v0.1.0
+guix gc -R "$v0_1_0_drv" | grep guile-gcrypt-9e3eacd
+test "$v0_1_0_drv" != "$latest_drv"
+test "$v0_1_0_drv" != "$orig_drv"
+
if guix build guix --with-commit=guile-gcrypt=000 -d
then false; else true; fi
diff --git a/tests/services.scm b/tests/services.scm
index 44ad0022c6..572fe38164 100644
--- a/tests/services.scm
+++ b/tests/services.scm
@@ -26,10 +26,6 @@
#:use-module (srfi srfi-64)
#:use-module (ice-9 match))
-(define live-service
- (@@ (gnu services herd) live-service))
-
-
(test-begin "services")
(test-equal "services, default value"