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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 15:50:49 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:44 +0100
commit66c39102e51a6d5915161d29fd8641129520ee35 (patch)
tree3acbfdc2b93406e56c1380eb735456c0d62643a4
parent15f98b0d23cf39e713cf95a9cae5f0064c4eeada (diff)
downloadpatches-66c39102e51a6d5915161d29fd8641129520ee35.tar
patches-66c39102e51a6d5915161d29fd8641129520ee35.tar.gz
gnu: Add r-ldblock.
* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 69100d7091..af2cefa688 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9949,6 +9949,37 @@ metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines
by Ernst and Kellis.")
(license license:artistic2.0)))
+(define-public r-ldblock
+ (package
+ (name "r-ldblock")
+ (version "1.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ldblock" version))
+ (sha256
+ (base32
+ "18nfsixh6d2wfrb9laqsgly5w1frzihhak683k0p8fdf51h4aqba"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-erma" ,r-erma)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-go-db" ,r-go-db)
+ ("r-homo-sapiens" ,r-homo-sapiens)
+ ("r-matrix" ,r-matrix)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-snpstats" ,r-snpstats)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/ldblock")
+ (synopsis "Data structures for linkage disequilibrium measures in populations")
+ (description
+ "This package defines data structures for @dfn{linkage
+disequilibrium} (LD) measures in populations. Its purpose is to simplify
+handling of existing population-level data for the purpose of flexibly
+defining LD blocks.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")