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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2019-01-07 11:55:19 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-01-07 11:56:18 +0100 |
| commit | e942813aac7651986b556407956f61943578eb4d (patch) | |
| tree | 4353bc5cdc48ba96f0f66cd8ddf4c072f5e2e352 | |
| parent | ad6f13308b1b3ee38ef76482bc597d9a9e1a31c2 (diff) | |
| download | patches-e942813aac7651986b556407956f61943578eb4d.tar patches-e942813aac7651986b556407956f61943578eb4d.tar.gz | |
gnu: Add mantis.
* gnu/packages/bioinformatics.scm (mantis): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 35 |
1 files changed, 34 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d4661cf515..2a06a6e5ef 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> @@ -13285,6 +13285,39 @@ descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.") (license license:gpl3+))) +(define-public mantis + (let ((commit "4ffd171632c2cb0056a86d709dfd2bf21bc69b84") + (revision "1")) + (package + (name "mantis") + (version (git-version "0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/splatlab/mantis.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0iqbr0dhmlc8mzpirmm2s4pkzkwdgrcx50yx6cv3wlr2qi064p55")))) + (build-system cmake-build-system) + (arguments '(#:tests? #f)) ; there are none + (inputs + `(("sdsl-lite" ,sdsl-lite) + ("openssl" ,openssl) + ("zlib" ,zlib))) + (home-page "https://github.com/splatlab/mantis") + (synopsis "Large-scale sequence-search index data structure") + (description "Mantis is a space-efficient data structure that can be +used to index thousands of raw-read genomics experiments and facilitate +large-scale sequence searches on those experiments. Mantis uses counting +quotient filters instead of Bloom filters, enabling rapid index builds and +queries, small indexes, and exact results, i.e., no false positives or +negatives. Furthermore, Mantis is also a colored de Bruijn graph +representation, so it supports fast graph traversal and other topological +analyses in addition to large-scale sequence-level searches.") + (license license:bsd-3)))) + (define-public r-diversitree (package (name "r-diversitree") |