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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2017-01-04 16:25:20 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-01-06 16:31:14 +0100 |
| commit | d407bdb9318aa56ed2e0ffe520fa606a84568b01 (patch) | |
| tree | 534912e8c5a51612585523273bdd5e422541fb2d | |
| parent | 6193563a3648ae1732aa10939c8e9bf1b7e3a71d (diff) | |
| download | patches-d407bdb9318aa56ed2e0ffe520fa606a84568b01.tar patches-d407bdb9318aa56ed2e0ffe520fa606a84568b01.tar.gz | |
gnu: Add r-copyhelper.
* gnu/packages/bioinformatics.scm (r-copyhelper): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 98d9f92e37..35269f8071 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7894,3 +7894,29 @@ common bioinformatics tools.") "This package provides tools for processing short read data from ChIPseq experiments.") (license license:artistic2.0))) + +(define-public r-copyhelper + (package + (name "r-copyhelper") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (string-append "http://bioconductor.org/packages/release/" + "data/experiment/src/contrib/CopyhelpeR_" + version ".tar.gz")) + (sha256 + (base32 + "0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq")))) + (properties `((upstream-name . "CopyhelpeR"))) + (build-system r-build-system) + (home-page "http://bioconductor.org/packages/CopyhelpeR/") + (synopsis "Helper files for CopywriteR") + (description + "This package contains the helper files that are required to run the +Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content +and mappability files for the reference genomes hg18, hg19, hg38, mm9 and +mm10. In addition, it contains a blacklist filter to remove regions that +display copy number variation. Files are stored as GRanges objects from the +GenomicRanges Bioconductor package.") + (license license:gpl2))) |