diff options
| author | Roel Janssen <roel@gnu.org> | 2020-04-26 21:07:45 +0200 |
|---|---|---|
| committer | Roel Janssen <roel@gnu.org> | 2020-04-26 21:07:45 +0200 |
| commit | 3699bcf54ac51c99c2807afd60d1eeebc00329ec (patch) | |
| tree | ddfffd79585779973ecd84b403279e0ed07eb19f | |
| parent | ec20858a6a9453af1d9bcf3b6efe564f352af2a7 (diff) | |
| download | patches-3699bcf54ac51c99c2807afd60d1eeebc00329ec.tar patches-3699bcf54ac51c99c2807afd60d1eeebc00329ec.tar.gz | |
gnu: Add r-motifdb.
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2d7663715a..9ecf42e783 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3998,6 +3998,30 @@ database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.") (license license:gpl2))) +(define-public r-motifdb + (package + (name "r-motifdb") + (version "1.28.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "MotifDb" version)) + (sha256 + (base32 "0m5apkjlvdq9yhjdyds3hivfnkbm6f059hy2bkjhalrlhd2si2jc")))) + (properties `((upstream-name . "MotifDb"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-iranges" ,r-iranges) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-splitstackshape" ,r-splitstackshape))) + (home-page "https://www.bioconductor.org/packages/MotifDb/") + (synopsis "Annotated collection of protein-DNA binding sequence motifs") + (description "This package provides more than 2000 annotated position +frequency matrices from nine public sources, for multiple organisms.") + (license license:artistic2.0))) + (define-public r-motifstack (package (name "r-motifstack") |