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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-12-23 17:34:45 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-01-07 17:18:17 +0100 |
| commit | 03ea5a357ecc8d821078cbbcfb038ee6eeb46898 (patch) | |
| tree | 4c9b1c9901e7253114bb6869cf6d661aaf73dcdc | |
| parent | c43a011de3c0155b4ccf3b02505fbce86d01b22e (diff) | |
| download | patches-03ea5a357ecc8d821078cbbcfb038ee6eeb46898.tar patches-03ea5a357ecc8d821078cbbcfb038ee6eeb46898.tar.gz | |
gnu: Add seqPattern.
* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9224abda19..f574bde9e7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3886,6 +3886,32 @@ genome data packages and support for efficient SNP representation.") microarray data, using nearest neighbor averaging.") (license license:gpl2+))) +(define-public r-seqpattern + (package + (name "r-seqpattern") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "seqPattern" version)) + (sha256 + (base32 + "0p9zj6bic7sa0hb2bjm988kkk5n9r1kvlbqkzvy702f642n0j53i")))) + (properties + `((upstream-name . "seqPattern"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-plotrix" ,r-plotrix))) + (home-page "http://bioconductor.org/packages/seqPattern") + (synopsis "Visualising oligonucleotide patterns and motif occurrences") + (description + "This package provides tools to visualize oligonucleotide patterns and +sequence motif occurrences across a large set of sequences centred at a common +reference point and sorted by a user defined feature.") + (license license:gpl3+))) + (define-public r-qtl (package (name "r-qtl") |