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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 17:19:25 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:44 +0100
commit2e4ce60e7ce78c2aeb6d2921a99728f83e0d3563 (patch)
tree3edf3d17985d6596fda1d600ac0ea7c9229f65e9
parent4272000661f61969e1fe64d950e593eb56642a36 (diff)
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patches-2e4ce60e7ce78c2aeb6d2921a99728f83e0d3563.tar.gz
gnu: Add r-gwascat.
* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm40
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 90892f1903..6ca40c586c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10080,6 +10080,46 @@ grid graphics package. This results in genomic information plotted together
with your data.")
(license license:artistic2.0)))
+(define-public r-gwascat
+ (package
+ (name "r-gwascat")
+ (version "2.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "gwascat" version))
+ (sha256
+ (base32
+ "0n5x5i5v6a8wpn5mxmlpkl34b4kyypmymiwww6g61zch7xqrgywi"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-annotationhub" ,r-annotationhub)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggbio" ,r-ggbio)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gqtlstats" ,r-gqtlstats)
+ ("r-graph" ,r-graph)
+ ("r-gviz" ,r-gviz)
+ ("r-homo-sapiens" ,r-homo-sapiens)
+ ("r-iranges" ,r-iranges)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-snpstats" ,r-snpstats)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/gwascat")
+ (synopsis "Tools for data in the EMBL-EBI GWAS catalog")
+ (description
+ "This package provides tools for representing and modeling data in the
+EMBL-EBI GWAS catalog.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")