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| author | Ben Woodcroft <donttrustben@gmail.com> | 2017-03-17 21:24:13 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2017-03-17 21:43:27 +1000 |
| commit | 0a3063d64077f164670b8e7d0bc58b5f40ffeb12 (patch) | |
| tree | c94302880b4ffd7b8ef31ee1e8018d0b0a2a50db | |
| parent | ba1be533ad4db5a032559fc1a6f501b5de381088 (diff) | |
| download | patches-0a3063d64077f164670b8e7d0bc58b5f40ffeb12.tar patches-0a3063d64077f164670b8e7d0bc58b5f40ffeb12.tar.gz | |
gnu: Add ocaml-mcl.
* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
| -rw-r--r-- | gnu/packages/machine-learning.scm | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 5379893b76..30f005a331 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -26,6 +26,7 @@ #:use-module (guix svn-download) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) + #:use-module (guix build-system ocaml) #:use-module (guix build-system r) #:use-module (gnu packages) #:use-module (gnu packages autotools) @@ -35,6 +36,7 @@ #:use-module (gnu packages gcc) #:use-module (gnu packages image) #:use-module (gnu packages maths) + #:use-module (gnu packages ocaml) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) @@ -239,6 +241,39 @@ networks) based on simulation of (stochastic) flow in graphs.") ;; http://listserver.ebi.ac.uk/pipermail/mcl-users/2016/000376.html (license license:gpl3))) +(define-public ocaml-mcl + (package + (name "ocaml-mcl") + (version "12-068oasis4") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/fhcrc/mcl/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1l5jbhwjpsj38x8b9698hfpkv75h8hn3kj0gihjhn8ym2cwwv110")))) + (build-system ocaml-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'configure 'patch-paths + (lambda _ + (substitute* "configure" + (("SHELL = /bin/sh") (string-append "SHELL = "(which "sh")))) + (substitute* "setup.ml" + (("LDFLAGS=-fPIC") + (string-append "LDFLAGS=-fPIC\"; \"SHELL=" (which "sh")))) + #t))))) + (home-page "https://github.com/fhcrc/mcl") + (synopsis "OCaml wrappers around MCL") + (description + "This package provides OCaml bindings for the MCL graph clustering +algorithm.") + (license license:gpl3))) + (define-public randomjungle (package (name "randomjungle") |