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authorRicardo Wurmus <rekado@elephly.net>2019-03-29 14:57:23 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-29 17:13:41 +0100
commit41aab7d186d36876c3ad8202e4d78313235998d3 (patch)
tree7ba4cb9cf7dcf1ce4246b579797cb3f84394f45c
parent9398152ad1f4e130ad895c8bb756de8a33e91f7f (diff)
downloadpatches-41aab7d186d36876c3ad8202e4d78313235998d3.tar
patches-41aab7d186d36876c3ad8202e4d78313235998d3.tar.gz
gnu: Add r-bacon.
* gnu/packages/bioconductor.scm (r-bacon): New variable.
-rw-r--r--gnu/packages/bioconductor.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2bb0e8509c..48c6009864 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3159,3 +3159,28 @@ convenience of viewing and sharing with other researchers. Additionally,
abseqR extends abseqPy to compare multiple repertoire analyses and perform
further downstream analysis on its output.")
(license license:gpl3)))
+
+(define-public r-bacon
+ (package
+ (name "r-bacon")
+ (version "1.10.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bacon" version))
+ (sha256
+ (base32
+ "1pd3p1cfggiy08458vplsy3s1zm5jqqcwrv4fks8ra2kf97j38df"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocparallel" ,r-biocparallel)
+ ("r-ellipse" ,r-ellipse)
+ ("r-ggplot2" ,r-ggplot2)))
+ (home-page "https://bioconductor.org/packages/bacon/")
+ (synopsis "Controlling bias and inflation in association studies")
+ (description
+ "Bacon can be used to remove inflation and bias often observed in
+epigenome- and transcriptome-wide association studies. To this end bacon
+constructs an empirical null distribution using a Gibbs Sampling algorithm by
+fitting a three-component normal mixture on z-scores.")
+ (license license:gpl2+)))