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| author | Ricardo Wurmus <rekado@elephly.net> | 2016-07-12 12:19:15 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-07-12 12:19:15 +0200 |
| commit | 9a8f309cf1f654b9775caf0ee1bc65ee274d4117 (patch) | |
| tree | 0a92442c91b301002ef08366febd2a60375b4502 | |
| parent | 34c553b07e0385cb6f59efe075e036bd3297d049 (diff) | |
| download | patches-9a8f309cf1f654b9775caf0ee1bc65ee274d4117.tar patches-9a8f309cf1f654b9775caf0ee1bc65ee274d4117.tar.gz | |
gnu: Add bedtools-2.18.
* gnu/packages/bioinformatics.scm (bedtools-2.18): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 15 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5ab3bcc3ae..355b578623 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -258,6 +258,21 @@ intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.") (license license:gpl2))) +;; Later releases of bedtools produce files with more columns than +;; what Ribotaper expects. +(define-public bedtools-2.18 + (package (inherit bedtools) + (name "bedtools") + (version "2.18.0") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/arq5x/bedtools2/" + "archive/v" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf")))))) + (define-public bioawk (package (name "bioawk") |