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authorRicardo Wurmus <rekado@elephly.net>2020-04-17 15:50:29 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-04-17 15:53:03 +0200
commit974bf81776bd13f2162ebc0b2b01466509840b12 (patch)
treeef5b1288d99008237ef1ca4ee0bfdc2659f0cbdc
parentd8fce2362bbd4d35c1b4b7dfb5babdf9a86bc4bb (diff)
downloadpatches-974bf81776bd13f2162ebc0b2b01466509840b12.tar
patches-974bf81776bd13f2162ebc0b2b01466509840b12.tar.gz
gnu: python-pygenometracks: Update to 3.3.
* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.3. [arguments]: Add phase "relax-requirements"; disable tests. [propagated-inputs]: Remove python-configparser and python-hicexplorer; add python-gffutils, python-pysam, and python-tqdm.
-rw-r--r--gnu/packages/bioinformatics.scm24
1 files changed, 18 insertions, 6 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a2c168b01c..b9be0c1918 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13773,23 +13773,35 @@ genomic scores), long range contacts and the visualization of viewpoints.")
(define-public python-pygenometracks
(package
(name "python-pygenometracks")
- (version "2.0")
+ (version "3.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyGenomeTracks" version))
(sha256
(base32
- "1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5"))))
+ "16laa0wnf4qn9fb9ych4w1vqhqwjss70v0y0f6wp4gwqfrlgac0f"))))
(build-system python-build-system)
+ (arguments
+ `(#:tests? #f ; there are none
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "setup.py"
+ (("matplotlib ==3.1.1")
+ "matplotlib >=3.1.1"))
+ #t)))))
(propagated-inputs
- `(("python-configparser" ,python-configparser)
- ("python-future" ,python-future)
- ("python-hicexplorer" ,python-hicexplorer)
+ `(("python-future" ,python-future)
+ ("python-gffutils" ,python-gffutils)
+ ("python-hicmatrix" ,python-hicmatrix)
("python-intervaltree" ,python-intervaltree)
("python-matplotlib" ,python-matplotlib)
("python-numpy" ,python-numpy)
- ("python-pybigwig" ,python-pybigwig)))
+ ("python-pybigwig" ,python-pybigwig)
+ ("python-pysam" ,python-pysam)
+ ("python-tqdm" ,python-tqdm)))
(native-inputs
`(("python-pytest" ,python-pytest)))
(home-page "https://pygenometracks.readthedocs.io")