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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-27 11:28:38 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-27 11:28:38 +0100 |
| commit | 5f1e31094d390a85bb91e8df1efbcb2dd2e39cf4 (patch) | |
| tree | 8c62d70865facd7956c931d377802666a9b80339 | |
| parent | 2a509880d4c543013c49fc45bbc63dd49b8d4a81 (diff) | |
| download | patches-5f1e31094d390a85bb91e8df1efbcb2dd2e39cf4.tar patches-5f1e31094d390a85bb91e8df1efbcb2dd2e39cf4.tar.gz | |
gnu: trim-galore: Fix test for Python.
* gnu/packages/bioinformatics.scm (trim-galore)[arguments]: Replace
"configure" phase to skip ill-advised test for Python.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 10 |
1 files changed, 9 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1f2991418a..3f94ef54cd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10896,7 +10896,15 @@ with narrow binding events such as transcription factor ChIP-seq.") `(#:tests? #f ; no tests #:phases (modify-phases %standard-phases - (delete 'configure) + (replace 'configure + (lambda _ + ;; Trim Galore tries to figure out what version of Python + ;; cutadapt is using by looking at the shebang. Of course that + ;; doesn't work, because cutadapt is wrapped in a shell script. + (substitute* "trim_galore" + (("my \\$python_return.*") + "my $python_return = \"Python 3.999\";\n")) + #t)) (delete 'build) (add-after 'unpack 'hardcode-tool-references (lambda* (#:key inputs #:allow-other-keys) |