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| author | Roel Janssen <roel@gnu.org> | 2018-03-29 14:20:20 +0200 |
|---|---|---|
| committer | Leo Famulari <leo@famulari.name> | 2018-03-30 10:47:57 -0400 |
| commit | 183ce9884924794677eefca78cf445ada5551260 (patch) | |
| tree | 35f7fd04d330c1be3abb4b53158b7e9f64f3c25a | |
| parent | f342bb58fef34d2b1364a9fac1d882ffcd329904 (diff) | |
| download | patches-183ce9884924794677eefca78cf445ada5551260.tar patches-183ce9884924794677eefca78cf445ada5551260.tar.gz | |
gnu: Add r-regioner.
* gnu/packages/bioconductor.scm (r-regioner): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 31 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f557dce8e5..09581d9fde 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1,5 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2018 Roel Janssen <roel@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -21,7 +22,9 @@ #:use-module (guix packages) #:use-module (guix download) #:use-module (guix build-system r) - #:use-module (gnu packages)) + #:use-module (gnu packages) + #:use-module (gnu packages statistics) + #:use-module (gnu packages bioinformatics)) (define-public r-hpar (package @@ -40,3 +43,30 @@ (description "This package provides a simple interface to and data from the Human Protein Atlas project.") (license license:artistic2.0))) + +(define-public r-regioner + (package + (name "r-regioner") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "regioneR" version)) + (sha256 + (base32 + "1vprp3l929hwzmvgskbhawfgnrymwc9n2rxd16rgagnv1dxnjxfp")))) + (properties `((upstream-name . "regioneR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-memoise" ,r-memoise) + ("r-genomicranges" ,r-genomicranges) + ("r-bsgenome" ,r-bsgenome) + ("r-rtracklayer" ,r-rtracklayer) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-iranges" ,r-iranges))) + (home-page "https://bioconductor.org/packages/regioneR/") + (synopsis "Association analysis of genomic regions") + (description "This package offers a statistical framework based on +customizable permutation tests to assess the association between genomic +region sets and other genomic features.") + (license license:artistic2.0))) |