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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-01-16 23:14:13 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-01-16 23:18:27 +0100 |
| commit | b91cfa22e1b9f3e5d3a62ee65ee71a6e708b9b53 (patch) | |
| tree | 314ea5421af6c6a1ffb23fde74238759fc286892 | |
| parent | 1fdfbadff0c69efc3c5e5b5f013e494f6289c18a (diff) | |
| download | patches-b91cfa22e1b9f3e5d3a62ee65ee71a6e708b9b53.tar patches-b91cfa22e1b9f3e5d3a62ee65ee71a6e708b9b53.tar.gz | |
gnu: Add r-centipede.
* gnu/packages/bioinformatics.scm (r-centipede): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4b9cd22f86..b14b7d4caf 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5159,6 +5159,30 @@ sequence.") (supported-systems '("i686-linux" "x86_64-linux")) (license license:bsd-3))) +(define-public r-centipede + (package + (name "r-centipede") + (version "1.2") + (source (origin + (method url-fetch) + (uri (string-append "http://download.r-forge.r-project.org/" + "src/contrib/CENTIPEDE_" version ".tar.gz")) + (sha256 + (base32 + "1hsx6qgwr0i67fhy9257zj7s0ppncph2hjgbia5nn6nfmj0ax6l9")))) + (build-system r-build-system) + (home-page "http://centipede.uchicago.edu/") + (synopsis "Predict transcription factor binding sites") + (description + "CENTIPEDE applies a hierarchical Bayesian mixture model to infer regions +of the genome that are bound by particular transcription factors. It starts +by identifying a set of candidate binding sites, and then aims to classify the +sites according to whether each site is bound or not bound by a transcription +factor. CENTIPEDE is an unsupervised learning algorithm that discriminates +between two different types of motif instances using as much relevant +information as possible.") + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-vegan (package (name "r-vegan") |