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authorBen Woodcroft <donttrustben@gmail.com>2018-07-29 21:57:51 +1000
committerBen Woodcroft <donttrustben@gmail.com>2018-07-29 21:58:00 +1000
commit5d5a02dd4c036d790c209bc235a5702488f3cc33 (patch)
tree918eed348e770b566a226831a33f2cb9936bb8f5
parent10d53153613f97731a32a85077db6e0a4f2baa98 (diff)
downloadpatches-5d5a02dd4c036d790c209bc235a5702488f3cc33.tar
patches-5d5a02dd4c036d790c209bc235a5702488f3cc33.tar.gz
gnu: Add python-fastalite.
* gnu/packages/bioinformatics.scm (python-fastalite, python2-fastalite): New variables.
-rw-r--r--gnu/packages/bioinformatics.scm23
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e87cef61be..4d84b90f1e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -767,6 +767,29 @@ into separate processes; and more.")
(define-public python2-biopython
(package-with-python2 python-biopython))
+(define-public python-fastalite
+ (package
+ (name "python-fastalite")
+ (version "0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "fastalite" version))
+ (sha256
+ (base32
+ "1qli6pxp77i9xn2wfciq2zaxhl82bdxb33cpzqzj1z25yd036wqj"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f)) ; Test data is not distributed.
+ (home-page "https://github.com/nhoffman/fastalite")
+ (synopsis "Simplest possible FASTA parser")
+ (description "This library implements a FASTA and a FASTQ parser without
+relying on a complex dependency tree.")
+ (license license:expat)))
+
+(define-public python2-fastalite
+ (package-with-python2 python-fastalite))
+
(define-public bpp-core
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.