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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 12:24:12 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 12:27:16 +0100 |
| commit | 37200dbcc37ac210609f1452e14c9ba0a98a97ee (patch) | |
| tree | b6a78cd23798615abb9c135d055fdc289ffe9bf2 | |
| parent | 8e48d36f26fd6943c118945a33e14f2c321231cf (diff) | |
| download | patches-37200dbcc37ac210609f1452e14c9ba0a98a97ee.tar patches-37200dbcc37ac210609f1452e14c9ba0a98a97ee.tar.gz | |
gnu: r-rhdf5lib: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.0.
[source]: Add snippet to remove bundled binaries.
[arguments]: Replace references to hdf5 with references to hdf5-1.10.
[native-inputs]: Likewise.
[propagated-inputs]: Replace hdf5 with hdf5-1.10.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 11 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 213c5c803c..9f2dd6cf64 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10830,14 +10830,20 @@ block processing.") (define-public r-rhdf5lib (package (name "r-rhdf5lib") - (version "1.2.1") + (version "1.4.0") (source (origin (method url-fetch) (uri (bioconductor-uri "Rhdf5lib" version)) (sha256 (base32 - "1y59acac6v8hrhv84gghn9ifsni9xxxacaj177rrl4frmkrz4x3c")))) + "01gpz780g850ql20b2ql6pvr678ydk4nq4sn5iiih94a4crb9lz1")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Delete bundled binaries + (delete-file-recursively "src/winlib/") + #t)))) (properties `((upstream-name . "Rhdf5lib"))) (build-system r-build-system) (arguments @@ -10854,7 +10860,7 @@ block processing.") "'%s/libhdf5.a %s/libhdf5.a -lz'")) (with-directory-excursion "src" (invoke "tar" "xvf" (assoc-ref inputs "hdf5-source")) - (rename-file (string-append "hdf5-" ,(package-version hdf5)) + (rename-file (string-append "hdf5-" ,(package-version hdf5-1.10)) "hdf5") ;; Remove timestamp and host system information to make ;; the build reproducible. @@ -10883,9 +10889,9 @@ block processing.") (inputs `(("zlib" ,zlib))) (propagated-inputs - `(("hdf5" ,hdf5))) + `(("hdf5" ,hdf5-1.10))) (native-inputs - `(("hdf5-source" ,(package-source hdf5)))) + `(("hdf5-source" ,(package-source hdf5-1.10)))) (home-page "https://bioconductor.org/packages/Rhdf5lib") (synopsis "HDF5 library as an R package") (description "This package provides C and C++ HDF5 libraries for use in R |