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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-10-04 21:18:34 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-10-05 09:21:54 +0200 |
| commit | f79b59e3114af8fcd598427655f3ab9512d58164 (patch) | |
| tree | 9cbad33996e8f7f09ff951288840783936b55df5 | |
| parent | 4ae4a15232bff0e93cbfc5d48e49a29a23a73cd6 (diff) | |
| download | patches-f79b59e3114af8fcd598427655f3ab9512d58164.tar patches-f79b59e3114af8fcd598427655f3ab9512d58164.tar.gz | |
gnu: bcftools: Update to 1.9.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 27 |
1 files changed, 9 insertions, 18 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 996e3731f3..8a79f66823 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -288,34 +288,25 @@ BAM files.") (define-public bcftools (package (name "bcftools") - (version "1.8") + (version "1.9") (source (origin (method url-fetch) - (uri (string-append - "https://github.com/samtools/bcftools/releases/download/" - version "/bcftools-" version ".tar.bz2")) + (uri (string-append "https://github.com/samtools/bcftools/" + "releases/download/" + version "/bcftools-" version ".tar.bz2")) (sha256 (base32 - "1vgw2mwngq20c530zim52zvgmw1lci8rzl33pvh44xqk3xlzvjsa")) + "1j3h638i8kgihzyrlnpj82xg1b23sijibys9hvwari3fy7kd0dkg")) (modules '((guix build utils))) (snippet '(begin ;; Delete bundled htslib. - (delete-file-recursively "htslib-1.8") + (delete-file-recursively "htslib-1.9") #t)))) (build-system gnu-build-system) (arguments - `(#:test-target "test" - #:configure-flags (list "--with-htslib=system") - #:make-flags - (list - "USE_GPL=1" - "LIBS=-lgsl -lgslcblas" - (string-append "prefix=" (assoc-ref %outputs "out")) - (string-append "HTSDIR=" (assoc-ref %build-inputs "htslib") "/include") - (string-append "HTSLIB=" (assoc-ref %build-inputs "htslib") "/lib/libhts.so") - (string-append "BGZIP=" (assoc-ref %build-inputs "htslib") "/bin/bgzip") - (string-append "TABIX=" (assoc-ref %build-inputs "htslib") "/bin/tabix") - (string-append "PACKAGE_VERSION=" ,version)) + `(#:configure-flags + (list "--enable-libgsl") + #:test-target "test" #:phases (modify-phases %standard-phases (add-before 'check 'patch-tests |