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authorRicardo Wurmus <rekado@elephly.net>2019-03-06 21:23:42 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 21:23:42 +0100
commitfe0b76e2159589227c2b4354897d69234a1192dc (patch)
tree62572482a894af4baf78cea6b2a4e630eb5f8429
parent40a650571155933794523279adc435fd7d84fd2a (diff)
downloadpatches-fe0b76e2159589227c2b4354897d69234a1192dc.tar
patches-fe0b76e2159589227c2b4354897d69234a1192dc.tar.gz
gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.
-rw-r--r--gnu/packages/bioconductor.scm31
-rw-r--r--gnu/packages/bioinformatics.scm31
2 files changed, 31 insertions, 31 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c1c987e82d..d66dec6ba7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -227,6 +227,37 @@ default." )
based on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
+(define-public r-bsgenome-hsapiens-ucsc-hg19
+ (package
+ (name "r-bsgenome-hsapiens-ucsc-hg19")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Hsapiens.UCSC.hg19_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8"))))
+ (properties
+ `((upstream-name . "BSgenome.Hsapiens.UCSC.hg19")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/")
+ (synopsis "Full genome sequences for Homo sapiens")
+ (description
+ "This package provides full genome sequences for Homo sapiens as provided
+by UCSC (hg19, February 2009) and stored in Biostrings objects.")
+ (license license:artistic2.0)))
+
(define-public r-genelendatabase
(package
(name "r-genelendatabase")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1e0abb3f42..67eee4024e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8105,37 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and
Stephens (1990).")
(license license:lgpl2.0+)))
-(define-public r-bsgenome-hsapiens-ucsc-hg19
- (package
- (name "r-bsgenome-hsapiens-ucsc-hg19")
- (version "1.4.0")
- (source (origin
- (method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/"
- "BSgenome.Hsapiens.UCSC.hg19_"
- version ".tar.gz"))
- (sha256
- (base32
- "1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8"))))
- (properties
- `((upstream-name . "BSgenome.Hsapiens.UCSC.hg19")))
- (build-system r-build-system)
- ;; As this package provides little more than a very large data file it
- ;; doesn't make sense to build substitutes.
- (arguments `(#:substitutable? #f))
- (propagated-inputs
- `(("r-bsgenome" ,r-bsgenome)))
- (home-page
- "https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/")
- (synopsis "Full genome sequences for Homo sapiens")
- (description
- "This package provides full genome sequences for Homo sapiens as provided
-by UCSC (hg19, February 2009) and stored in Biostrings objects.")
- (license license:artistic2.0)))
-
(define-public r-bsgenome-mmusculus-ucsc-mm9
(package
(name "r-bsgenome-mmusculus-ucsc-mm9")