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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 13:35:18 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 13:35:18 +0100 |
| commit | 0f5c9cec502e0b4c8b4a8aa5b9c42474920c3e03 (patch) | |
| tree | 483e344e12b5e5d47f163abb4def95a5672a5a58 | |
| parent | 86fded86c2cef1801b1f4a51a9766807512cda4c (diff) | |
| download | patches-0f5c9cec502e0b4c8b4a8aa5b9c42474920c3e03.tar patches-0f5c9cec502e0b4c8b4a8aa5b9c42474920c3e03.tar.gz | |
gnu: Add r-fdb-infiniummethylation-hg19.
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 79eab6b67d..39eb705a02 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -650,6 +650,38 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011) based on the knownGene track.") (license license:artistic2.0))) +(define-public r-fdb-infiniummethylation-hg19 + (package + (name "r-fdb-infiniummethylation-hg19") + (version "2.2.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "FDb.InfiniumMethylation.hg19_" + version ".tar.gz")) + (sha256 + (base32 + "0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0")))) + (properties + `((upstream-name . "FDb.InfiniumMethylation.hg19"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-annotationdbi" ,r-annotationdbi) + ("r-org-hs-eg-db" ,r-org-hs-eg-db) + ("r-txdb-hsapiens-ucsc-hg19-knowngene" ,r-txdb-hsapiens-ucsc-hg19-knowngene))) + (home-page "https://bioconductor.org/packages/FDb.InfiniumMethylation.hg19/") + (synopsis "Compiled HumanMethylation27 and HumanMethylation450 annotations") + (description + "This is an annotation package for Illumina Infinium DNA methylation +probes. It contains the compiled HumanMethylation27 and HumanMethylation450 +annotations.") + (license license:artistic2.0))) + ;;; Experiment data |