gnu: boost: Update to 1.60.0.

* gnu/packages/boost.scm (boost): Update to 1.60.0.
  [source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.

Also fix dependent packages:

* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
  [arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
  (libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
  (librevenge)[inputs]: Move boost from here...
  [propogated-inputs]: to here.
  [arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.

9 files changed, 135 insertions, 27 deletions

diff --git a/gnu-system.am b/gnu-system.am
index 45487a466a..fa2f038402 100644
--- a/gnu-system.am
+++ b/gnu-system.am
@@ -421,7 +421,6 @@ dist_patch_DATA =						\
   gnu/packages/patches/binutils-ld-new-dtags.patch		\
   gnu/packages/patches/binutils-loongson-workaround.patch	\
   gnu/packages/patches/bitlbee-configure-doc-fix.patch		\
-  gnu/packages/patches/boost-mips-avoid-m32.patch		\
   gnu/packages/patches/byobu-writable-status.patch		\
   gnu/packages/patches/calibre-drop-unrar.patch			\
   gnu/packages/patches/calibre-no-updates-dialog.patch		\
@@ -434,6 +433,7 @@ dist_patch_DATA =						\
   gnu/packages/patches/cpufrequtils-fix-aclocal.patch		\
   gnu/packages/patches/crda-optional-gcrypt.patch		\
   gnu/packages/patches/crossmap-allow-system-pysam.patch	\
+  gnu/packages/patches/csound-header-ordering.patch		\
   gnu/packages/patches/cssc-gets-undeclared.patch               \
   gnu/packages/patches/cssc-missing-include.patch               \
   gnu/packages/patches/clucene-contribs-lib.patch               \
@@ -533,6 +533,7 @@ dist_patch_DATA =						\
   gnu/packages/patches/libarchive-mtree-filename-length-fix.patch \
   gnu/packages/patches/libbonobo-activation-test-race.patch	\
   gnu/packages/patches/libcanberra-sound-theme-freedesktop.patch \
+  gnu/packages/patches/libcmis-fix-test-onedrive.patch		\
   gnu/packages/patches/libdrm-symbol-check.patch		\
   gnu/packages/patches/libevent-dns-tests.patch			\
   gnu/packages/patches/libmtp-devices.patch			\
@@ -604,6 +605,7 @@ dist_patch_DATA =						\
   gnu/packages/patches/nvi-dbpagesize-binpower.patch		\
   gnu/packages/patches/nvi-db4.patch				\
   gnu/packages/patches/openexr-missing-samples.patch		\
+  gnu/packages/patches/openimageio-boost-1.60.patch		\
   gnu/packages/patches/openjpeg-CVE-2015-6581.patch		\
   gnu/packages/patches/openjpeg-use-after-free-fix.patch	\
   gnu/packages/patches/openssl-runpath.patch			\
diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index ebae5d57d9..3cc5cebc2c 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -320,7 +320,8 @@ tools (analyzer, mono/stereo tools, crossovers).")
                     version "/Csound" version ".tar.gz"))
               (sha256
                (base32
-                "0a1sni6lr7qpwywpggbkp0ia3h9bwwgf9i87gsag8ra2h30v82hd"))))
+                "0a1sni6lr7qpwywpggbkp0ia3h9bwwgf9i87gsag8ra2h30v82hd"))
+              (patches (list (search-patch "csound-header-ordering.patch")))))
     (build-system cmake-build-system)
     (arguments
      ;; Work around this error on x86_64 with libc 2.22+:
@@ -1081,7 +1082,16 @@ software.")
        #:configure-flags
        (list (string-append "--boost-includes="
                             (assoc-ref %build-inputs "boost")
-                            "/include"))))
+                            "/include"))
+       #:phases (modify-phases %standard-phases
+                  (add-before
+                   'configure 'set-flags
+                   (lambda* (#:key inputs #:allow-other-keys)
+                     ;; See e.g. https://github.com/lvtk/lvtk/issues/21
+                     (setenv "LDFLAGS"
+                             (string-append
+                              "-L" (assoc-ref inputs "boost") "/lib "
+                              "-lboost_system")))))))
     (inputs
      `(("boost" ,boost)
        ("lv2" ,lv2)))
diff --git a/gnu/packages/boost.scm b/gnu/packages/boost.scm
index d3d0c0339a..0a644e8940 100644
--- a/gnu/packages/boost.scm
+++ b/gnu/packages/boost.scm
@@ -2,6 +2,7 @@
 ;;; Copyright © 2014 John Darrington <jmd@gnu.org>
 ;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2015 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -33,7 +34,7 @@
 (define-public boost
   (package
     (name "boost")
-    (version "1.58.0")
+    (version "1.60.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -42,8 +43,7 @@
                     ".tar.bz2"))
               (sha256
                (base32
-                "1rfkqxns60171q62cppiyzj8pmsbwp1l8jd7p6crriryqd7j1z7x"))
-              (patches (list (search-patch "boost-mips-avoid-m32.patch")))))
+                "0fzx6dwqbrkd4bcd8pjv0fpapwmrxxwr8yx9g67lihlsk3zzysk8"))))
     (build-system gnu-build-system)
     (inputs `(("zlib" ,zlib)))
     (native-inputs
@@ -63,7 +63,8 @@
               ;; so we disable that too.
               ,@(if (string-prefix? "mips64" (or (%current-target-system)
                                                  (%current-system)))
-                    '("--without-context" "--without-coroutine")
+                    '("--without-context"
+                      "--without-coroutine" "--without-coroutine2")
                     '()))))
        `(#:tests? #f
          #:phases
diff --git a/gnu/packages/graphics.scm b/gnu/packages/graphics.scm
index 4e15b814c8..560febe958 100644
--- a/gnu/packages/graphics.scm
+++ b/gnu/packages/graphics.scm
@@ -143,7 +143,8 @@ storage of the \"EXR\" file format for storing 16-bit floating-point images.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0mn7cz19mn8dcrhkq15h25gl20ammr1wz0j2j3c2vxs6ph7zn8jy"))))
+                "0mn7cz19mn8dcrhkq15h25gl20ammr1wz0j2j3c2vxs6ph7zn8jy"))
+              (patches (list (search-patch "openimageio-boost-1.60.patch")))))
     (build-system cmake-build-system)
     ;; FIXME: To run all tests successfully, test image sets from multiple
     ;; third party sources have to be present.  For details see
diff --git a/gnu/packages/libreoffice.scm b/gnu/packages/libreoffice.scm
index 7496a6c8b9..a82cde7d0a 100644
--- a/gnu/packages/libreoffice.scm
+++ b/gnu/packages/libreoffice.scm
@@ -25,6 +25,7 @@
                           non-copyleft x11-style))
   #:use-module (guix packages)
   #:use-module (guix utils)
+  #:use-module (gnu packages)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages bison)
@@ -130,15 +131,18 @@ CSV, CSS and XML.")
                "03ygxyb0vfjv8raif5q62sl33b54wkr5rzgadb8slijm6k281wpn"))))
     (build-system gnu-build-system)
     (native-inputs
-     `(("boost" ,boost)
-       ("cppunit" ,cppunit)
+     `(("cppunit" ,cppunit)
        ("doxygen" ,doxygen)
        ("pkg-config" ,pkg-config)))
     (inputs
      `(("zlib" ,zlib)))
+    (propagated-inputs                  ; Referenced by .la files
+     `(("boost" ,boost)))
     (arguments
      ;; avoid triggering configure errors by simple inclusion of boost headers
-     `(#:configure-flags '("--disable-werror")))
+     `(#:configure-flags '("--disable-werror"
+                           ;; Avoid undefined library references
+                           "LDFLAGS=-lboost_system")))
     (home-page "http://sourceforge.net/p/libwpd/wiki/librevenge/")
     (synopsis "Document importer for office suites")
     (description "Librevenge is a base library for writing document import
@@ -244,7 +248,8 @@ working with graphics in the WPG (WordPerfect Graphics) format.")
       (uri (string-append "mirror://sourceforge/" name "/" name "-"
                           version ".tar.gz"))
       (sha256 (base32
-               "1dprvk4fibylv24l7gr49gfqbkfgmxynvgssvdcycgpf7n8h4zm8"))))
+               "1dprvk4fibylv24l7gr49gfqbkfgmxynvgssvdcycgpf7n8h4zm8"))
+      (patches (list (search-patch "libcmis-fix-test-onedrive.patch")))))
     (build-system gnu-build-system)
     (native-inputs
      `(("cppunit" ,cppunit)
@@ -805,6 +810,8 @@ and to return information on pronunciations, meanings and synonyms.")
           "--with-system-libs" ; enable all --with-system-* flags
           (string-append "--with-boost-libdir="
                          (assoc-ref %build-inputs "boost") "/lib")
+          ;; Avoid undefined symbols required by boost::spirit
+          "LDFLAGS=-lboost_system"
           ;; Avoid a dependency on ucpp.
           "--with-idlc-cpp=cpp"
           ;; The fonts require an external tarball (crosextrafonts).
diff --git a/gnu/packages/patches/boost-mips-avoid-m32.patch b/gnu/packages/patches/boost-mips-avoid-m32.patch
deleted file mode 100644
index 811c9fb3aa..0000000000
--- a/gnu/packages/patches/boost-mips-avoid-m32.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-The following patch prevents the use of the -m32 flag on mips, where it
-is not understood by gcc, as well as other non-x86 architectures.
-
-diff -u -r boost_1_58_0.orig/tools/build/src/tools/gcc.jam boost_1_58_0/tools/build/src/tools/gcc.jam
---- boost_1_58_0.orig/tools/build/src/tools/gcc.jam	2015-04-04 19:25:07.000000000 +0200
-+++ boost_1_58_0/tools/build/src/tools/gcc.jam	2015-07-10 01:08:19.822733823 +0200
-@@ -451,7 +451,7 @@
-         else
-         {
-             local arch = [ feature.get-values architecture : $(properties) ] ;
--            if $(arch) != arm
-+            if $(arch) = x86
-             {
-                 if $(model) = 32
-                 {
diff --git a/gnu/packages/patches/csound-header-ordering.patch b/gnu/packages/patches/csound-header-ordering.patch
new file mode 100644
index 0000000000..3640d123dd
--- /dev/null
+++ b/gnu/packages/patches/csound-header-ordering.patch
@@ -0,0 +1,20 @@
+Prevent compilation issues with boost-1.60.0.
+
+Reported upstream at https://github.com/csound/csound/issues/570
+
+--- Csound6.05/Opcodes/chua/ChuaOscillator.cpp	2015-04-25 14:06:22.995646234 -0500
++++ Csound6.05/Opcodes/chua/ChuaOscillator.cpp	2015-12-21 10:31:58.182362640 -0600
+@@ -117,11 +117,12 @@
+ //     d = sys_variables(12);
+ //     gnor = a*(x.^3) + b*(x.^2) + c*x + d;
+ 
+-#include <OpcodeBase.hpp>
+ #include <boost/numeric/ublas/vector.hpp>
+ using namespace boost::numeric;
+ #include <cmath>
+ 
++#include <OpcodeBase.hpp>
++
+ #undef CS_KSMPS
+ #define CS_KSMPS     (opds.insdshead->ksmps)
+ 
diff --git a/gnu/packages/patches/libcmis-fix-test-onedrive.patch b/gnu/packages/patches/libcmis-fix-test-onedrive.patch
new file mode 100644
index 0000000000..adf2e0b8e5
--- /dev/null
+++ b/gnu/packages/patches/libcmis-fix-test-onedrive.patch
@@ -0,0 +1,35 @@
+Patch from resolution of http://sourceforge.net/p/libcmis/tickets/13/
+
+From 814c7845d53688b35a747cf193c2ff99e40a8652 Mon Sep 17 00:00:00 2001
+From: Jonathan Wakely <jwakely@redhat.com>
+Date: Wed, 2 Sep 2015 16:35:45 +0100
+Subject: [PATCH 5/5] Remove invalid comments from test JSON file.
+
+---
+ qa/libcmis/data/onedrive/search-result.json | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/qa/libcmis/data/onedrive/search-result.json b/qa/libcmis/data/onedrive/search-result.json
+index 61d250a..2482429 100644
+--- a/qa/libcmis/data/onedrive/search-result.json
++++ b/qa/libcmis/data/onedrive/search-result.json
+@@ -8,7 +8,7 @@
+       },
+       "name":"OneDriveFile",
+       "description":"",
+-      "parent_id":"folderA", // path: /A/Wrong File 
++      "parent_id":"folderA",
+       "size":18047,
+       "upload_location":"https://apis.live.net/v5.0/wrongFileId/content/",
+       "comments_count":0,
+@@ -32,7 +32,7 @@
+       },
+       "name":"OneDriveFile",
+       "description":"",
+-      "parent_id":"folderC", // path: /A/B/C/Right File
++      "parent_id":"folderC",
+       "size":4,
+       "upload_location":"https://apis.live.net/v5.0/rightFileId/content/",
+       "comments_count":0,
+-- 
+2.4.3
\ No newline at end of file
diff --git a/gnu/packages/patches/openimageio-boost-1.60.patch b/gnu/packages/patches/openimageio-boost-1.60.patch
new file mode 100644
index 0000000000..92fc3237bb
--- /dev/null
+++ b/gnu/packages/patches/openimageio-boost-1.60.patch
@@ -0,0 +1,47 @@
+From 875fbbd92695397bfc83d1cd5fdd4094e1d50199 Mon Sep 17 00:00:00 2001
+From: Larry Gritz <lg@larrygritz.com>
+Date: Mon, 28 Dec 2015 11:46:07 -0800
+Subject: [PATCH] Python ImageCache binding fixes -- disable broken calls
+
+Some of these calls (thankfully undocumented and presumably unused)
+are horribly broken. They compiled before, but with new Boost 1.60
+they don't even compile properly. So just comment them out on this
+obsolete branch. They are fully fixed in RB-1.6 and beyond.
+
+--- a/src/python/py_imagecache.cpp
++++ b/src/python/py_imagecache.cpp
+@@ -199,23 +199,24 @@ void declare_imagecache()
+         .def("destroy", &ImageCacheWrap::destroy)
+         .staticmethod("destroy")
+         .def("clear", &ImageCacheWrap::clear)
+-        .def("attribute", &ImageCacheWrap::attribute)
++        // .def("attribute", &ImageCacheWrap::attribute)
+         .def("attribute", &ImageCacheWrap::attribute_int)
+         .def("attribute", &ImageCacheWrap::attribute_float)
+-        .def("attribute", &ImageCacheWrap::attribute_double)
+-        .def("attribute", &ImageCacheWrap::attribute_char)
++        // .def("attribute", &ImageCacheWrap::attribute_double)
++        // .def("attribute", &ImageCacheWrap::attribute_char)
+         .def("attribute", &ImageCacheWrap::attribute_string)
+-        .def("getattribute", &ImageCacheWrap::attribute)
++        // .def("getattribute", &ImageCacheWrap::attribute)
+         .def("getattribute", &ImageCacheWrap::getattribute_int)
+         .def("getattribute", &ImageCacheWrap::getattribute_float)
+-        .def("getattribute", &ImageCacheWrap::getattribute_double)
+-        .def("getattribute", &ImageCacheWrap::getattribute_char)
++        // .def("getattribute", &ImageCacheWrap::getattribute_double)
++        // .def("getattribute", &ImageCacheWrap::getattribute_char)
+         .def("getattribute", &ImageCacheWrap::getattribute_string)
+-        .def("resolve_filename", &ImageCacheWrap::resolve_filename)
+-        .def("get_image_info", &ImageCacheWrap::get_image_info)
+-        .def("get_image_info", &ImageCacheWrap::get_image_info_old)
++        // .def("get_image_info", &ImageCacheWrap::get_image_info)
++        // .def("get_image_info", &ImageCacheWrap::get_image_info_old)
+         .def("get_imagespec", &ImageCacheWrap::get_imagespec)
+-        .def("get_pixels", &ImageCacheWrap::get_pixels)
++        // .def("get_pixels", &ImageCacheWrap::get_pixels)
++        .def("resolve_filename", &ImageCacheWrap::resolve_filename)
++
+ //      .def("get_tile", &ImageCacheWrap::get_tile)
+ //      .def("release_tile", &ImageCacheWrap::release_tile)
+ //      .def("tile_pixels", &ImageCacheWrap::tile_pixels)