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authorRicardo Wurmus <rekado@elephly.net>2019-03-06 21:35:20 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 21:35:20 +0100
commit3a08940e1a38d1f15630b6ad6678b1a79d70049d (patch)
tree3faf86d825a91b608f5edaffc09eb89e029d4f6e
parent7bc5d1b0e1f1265028f221a51d7ee1c526132f65 (diff)
downloadpatches-3a08940e1a38d1f15630b6ad6678b1a79d70049d.tar
patches-3a08940e1a38d1f15630b6ad6678b1a79d70049d.tar.gz
gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
-rw-r--r--gnu/packages/bioconductor.scm26
-rw-r--r--gnu/packages/bioinformatics.scm26
2 files changed, 26 insertions, 26 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a4e436e61d..a55439b94e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -360,6 +360,32 @@ musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
in Biostrings objects.")
(license license:artistic2.0)))
+(define-public r-org-ce-eg-db
+ (package
+ (name "r-org-ce-eg-db")
+ (version "3.7.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "org.Ce.eg.db_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"))))
+ (properties
+ `((upstream-name . "org.Ce.eg.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/")
+ (synopsis "Genome wide annotation for Worm")
+ (description
+ "This package provides mappings from Entrez gene identifiers to various
+annotations for the genome of the model worm Caenorhabditis elegans.")
+ (license license:artistic2.0)))
+
(define-public r-org-dr-eg-db
(package
(name "r-org-dr-eg-db")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b9973ba81f..9285d1889d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8006,32 +8006,6 @@ downloaded from Encode.")
on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
-(define-public r-org-ce-eg-db
- (package
- (name "r-org-ce-eg-db")
- (version "3.7.0")
- (source (origin
- (method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/"
- "org.Ce.eg.db_" version ".tar.gz"))
- (sha256
- (base32
- "1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"))))
- (properties
- `((upstream-name . "org.Ce.eg.db")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)))
- (home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/")
- (synopsis "Genome wide annotation for Worm")
- (description
- "This package provides mappings from Entrez gene identifiers to various
-annotations for the genome of the model worm Caenorhabditis elegans.")
- (license license:artistic2.0)))
-
(define-public r-org-dm-eg-db
(package
(name "r-org-dm-eg-db")