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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-03-21 11:52:56 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-03-21 11:52:56 +0100 |
| commit | 363ee7a3f4a489c1904616340e2b3db46ffc86c5 (patch) | |
| tree | 3a9c4b0dfe957561124cd6cc3f0c998853095b26 | |
| parent | 0def9120882f90372fd6bb2e80e8330d67745610 (diff) | |
| download | patches-363ee7a3f4a489c1904616340e2b3db46ffc86c5.tar patches-363ee7a3f4a489c1904616340e2b3db46ffc86c5.tar.gz | |
gnu: pigx-chipseq: Update to 0.0.10.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.10.
[inputs]: Remove r-rcas and duplicate of snakemake; add r-biocparallel,
r-biostrings, r-dplyr, r-genomicalignments, rsamtools, r-s4vectors, r-tibble,
r-tidyr, r-htmlwidgets, and r-rmarkdown.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 18 |
1 files changed, 13 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5fdf7f29d6..0fe0624aff 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12747,7 +12747,7 @@ expression report comparing samples in an easily configurable manner.") (define-public pigx-chipseq (package (name "pigx-chipseq") - (version "0.0.9") + (version "0.0.10") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_chipseq/" @@ -12755,7 +12755,7 @@ expression report comparing samples in an easily configurable manner.") "/pigx_chipseq-" version ".tar.gz")) (sha256 (base32 - "14ym5fmc16xil584jlhf66ldq38smb6jbcfwnjvqmi7v0vzybdsw")))) + "13w99bkr0w4j28ms0yzpl1x6fkpdqay0vh495q3x20bcilsjwnf1")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; parts of the tests rely on access to the network @@ -12774,22 +12774,30 @@ expression report comparing samples in an easily configurable manner.") ("coreutils" ,coreutils) ("r-minimal" ,r-minimal) ("r-argparser" ,r-argparser) + ("r-biocparallel" ,r-biocparallel) + ("r-biostrings" ,r-biostrings) ("r-chipseq" ,r-chipseq) ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) ("r-genomation" ,r-genomation) + ("r-genomicalignments" ,r-genomicalignments) ("r-genomicranges" ,r-genomicranges) + ("r-rsamtools" ,r-rsamtools) ("r-rtracklayer" ,r-rtracklayer) - ("r-rcas" ,r-rcas) + ("r-s4vectors" ,r-s4vectors) ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr) ("r-jsonlite" ,r-jsonlite) ("r-heatmaply" ,r-heatmaply) + ("r-htmlwidgets" ,r-htmlwidgets) ("r-ggplot2" ,r-ggplot2) ("r-plotly" ,r-plotly) + ("r-rmarkdown" ,r-rmarkdown) ("python-wrapper" ,python-wrapper) - ("python-magic" ,python-magic) ("python-pyyaml" ,python-pyyaml) + ("python-magic" ,python-magic) ("python-xlrd" ,python-xlrd) - ("snakemake" ,snakemake) ("trim-galore" ,trim-galore) ("macs" ,macs) ("multiqc" ,multiqc) |