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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-10-22 13:00:06 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-10-22 13:00:24 +0200 |
| commit | 09aa3d063a0eacf3fca8d4803fbb62bd7b1ee663 (patch) | |
| tree | 54ba0e0188820d09858146b189d6194df7c000a8 | |
| parent | 318ec0a896dff7f311d67c6ac9f1bea31efb5e3e (diff) | |
| download | patches-09aa3d063a0eacf3fca8d4803fbb62bd7b1ee663.tar patches-09aa3d063a0eacf3fca8d4803fbb62bd7b1ee663.tar.gz | |
gnu: Add r-ruvseq.
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1b779855b2..92b67453f6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -913,3 +913,29 @@ can be analyzed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e. assigned to their original reference barcode.") (license license:gpl2))) + +(define-public r-ruvseq + (package + (name "r-ruvseq") + (version "1.14.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "RUVSeq" version)) + (sha256 + (base32 + "16i5sm5af761k4zvspfi8jknsgln48bn538hxqqmlaq7wvlfxqxj")))) + (properties `((upstream-name . "RUVSeq"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-edaseq" ,r-edaseq) + ("r-edger" ,r-edger) + ("r-mass" ,r-mass))) + (home-page "https://github.com/drisso/RUVSeq") + (synopsis "Remove unwanted variation from RNA-Seq data") + (description + "This package implements methods to @dfn{remove unwanted variation} (RUV) +of Risso et al. (2014) for the normalization of RNA-Seq read counts between +samples.") + (license license:artistic2.0))) |