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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-09-15 20:53:21 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-09-15 20:53:21 +0200 |
| commit | 5094aa94724fd2111dbd7520ab2f21a4218523ae (patch) | |
| tree | 55e2a14d44755c7d160b99bbb2052a29779dbf69 | |
| parent | 5cf940de21a454c0556c019760835f2bb9dcbe0c (diff) | |
| download | patches-5094aa94724fd2111dbd7520ab2f21a4218523ae.tar patches-5094aa94724fd2111dbd7520ab2f21a4218523ae.tar.gz | |
gnu: Add r-affycompatible.
* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a87bcebdef..83f8343524 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1002,6 +1002,34 @@ packages.") measures for Affymetrix Oligonucleotide Arrays.") (license license:gpl2+))) +(define-public r-affycompatible + (package + (name "r-affycompatible") + (version "1.44.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "AffyCompatible" version)) + (sha256 + (base32 + "1zi96qa6vkgwvvy5cn6c3p1kbfsaz74zsw2kjxarz5qs744f0xvs")))) + (properties + `((upstream-name . "AffyCompatible"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-rcurl" ,r-rcurl) + ("r-xml" ,r-xml))) + (home-page "https://bioconductor.org/packages/AffyCompatible/") + (synopsis "Work with Affymetrix GeneChip files") + (description + "This package provides an interface to Affymetrix chip annotation and +sample attribute files. The package allows an easy way for users to download +and manage local data bases of Affynmetrix NetAffx annotation files. It also +provides access to @dfn{GeneChip Operating System} (GCOS) and @dfn{GeneChip +Command Console} (AGCC)-compatible sample annotation files.") + (license license:artistic2.0))) + (define-public r-annotate (package (name "r-annotate") |