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authorRicardo Wurmus <rekado@elephly.net>2019-03-29 14:59:12 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-29 17:13:45 +0100
commit051e8e1a5bec01952012cf7f1903cd72add0e25c (patch)
tree389b671c7f72f719e448ff21b2640b69f98222ac
parentc54ab337bcda46f4f9b0c9b4798a853e4d5a85b9 (diff)
downloadpatches-051e8e1a5bec01952012cf7f1903cd72add0e25c.tar
patches-051e8e1a5bec01952012cf7f1903cd72add0e25c.tar.gz
gnu: Add r-rgadem.
* gnu/packages/bioconductor.scm (r-rgadem): New variable.
-rw-r--r--gnu/packages/bioconductor.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 48c6009864..6df46ef379 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3184,3 +3184,28 @@ epigenome- and transcriptome-wide association studies. To this end bacon
constructs an empirical null distribution using a Gibbs Sampling algorithm by
fitting a three-component normal mixture on z-scores.")
(license license:gpl2+)))
+
+(define-public r-rgadem
+ (package
+ (name "r-rgadem")
+ (version "2.30.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "rGADEM" version))
+ (sha256
+ (base32
+ "1a3mvxabp7yb275cv1wr0rzyvjhnsaysk2hnmll4z4cci171z2j2"))))
+ (properties `((upstream-name . "rGADEM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-iranges" ,r-iranges)
+ ("r-seqlogo" ,r-seqlogo)))
+ (home-page "https://bioconductor.org/packages/rGADEM/")
+ (synopsis "De novo sequence motif discovery")
+ (description
+ "rGADEM is an efficient de novo motif discovery tool for large-scale
+genomic sequence data.")
+ (license license:artistic2.0)))