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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-11-09 16:45:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-11-09 16:45:21 +0100 |
| commit | 8a587c89af55d7fa858a65fe717cfbfbe84b0e1e (patch) | |
| tree | 548b3723e5e99cac92eb75bb5bf906f2688a8282 | |
| parent | cee9ab244f9ba9f3156b6aa50927418bae951096 (diff) | |
| download | patches-8a587c89af55d7fa858a65fe717cfbfbe84b0e1e.tar patches-8a587c89af55d7fa858a65fe717cfbfbe84b0e1e.tar.gz | |
gnu: Add r-savr.
* gnu/packages/bioconductor.scm (r-savr): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bab6b2b64d..bc13460299 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -969,3 +969,29 @@ using pre-clustering with the k-means algorithm. Functions are also provided to search for all neighbors within a given distance. Parallelization is achieved for all methods using the BiocParallel framework.") (license license:gpl3))) + +(define-public r-savr + (package + (name "r-savr") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "savR" version)) + (sha256 + (base32 + "13bwq2a2pygdkmhrcmvz525wsi5i01j911711zgs6x93wj20b2w7")))) + (properties `((upstream-name . "savR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-reshape2" ,r-reshape2) + ("r-scales" ,r-scales) + ("r-xml" ,r-xml))) + (home-page "https://github.com/bcalder/savR") + (synopsis "Parse and analyze Illumina SAV files") + (description + "This package provides tools to parse Illumina Sequence Analysis +Viewer (SAV) files, access data, and generate QC plots.") + (license license:agpl3+))) |