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authorRicardo Wurmus <rekado@elephly.net>2019-03-29 15:40:06 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-29 17:13:45 +0100
commite5bff3079d673d1d7816b0c30142935ef1e05791 (patch)
tree8f3f212099ead7a3eed03fd1772f8dd5b2d11728
parent2a72ef561b53b69210df2c1562f9d8ced35adabd (diff)
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patches-e5bff3079d673d1d7816b0c30142935ef1e05791.tar.gz
gnu: Add r-genomicscores.
* gnu/packages/bioconductor.scm (r-genomicscores): New variable.
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index af2d7ce335..0daea685e5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3271,3 +3271,34 @@ sequence motifs and amino acid sequence motifs. In addition, it provides the
flexibility for users to customize the graphic parameters such as the font
type and symbol colors.")
(license license:gpl2+)))
+
+(define-public r-genomicscores
+ (package
+ (name "r-genomicscores")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomicScores" version))
+ (sha256
+ (base32
+ "0lrhkcblvnki6kncwpavs01gbcz22yza6ma8zvfmbrrkfaxqzh8n"))))
+ (properties `((upstream-name . "GenomicScores")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationhub" ,r-annotationhub)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xml" ,r-xml)))
+ (home-page "https://github.com/rcastelo/GenomicScores/")
+ (synopsis "Work with genome-wide position-specific scores")
+ (description
+ "This package provides infrastructure to store and access genome-wide
+position-specific scores within R and Bioconductor.")
+ (license license:artistic2.0)))