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authorRicardo Wurmus <rekado@elephly.net>2019-08-28 00:38:46 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-08-29 11:38:12 +0200
commit711cec9d154786e995ba104bceb39a2564d5c72f (patch)
treecfe2803d6e35abda8e6e4d7f119546595d29c50a
parentad553ec4b12f24a0bbd25b547bac885ddb84776a (diff)
downloadpatches-711cec9d154786e995ba104bceb39a2564d5c72f.tar
patches-711cec9d154786e995ba104bceb39a2564d5c72f.tar.gz
gnu: Add r-harmony.
* gnu/packages/cran.scm (r-harmony): New variable.
-rw-r--r--gnu/packages/cran.scm39
1 files changed, 39 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ae8e9c5a47..458b141f91 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15097,3 +15097,42 @@ datasets, developed and maintained by the Macosko lab. It relies on
integrative non-negative matrix factorization to identify shared and
dataset-specific factors.")
(license license:gpl3)))
+
+(define-public r-harmony
+ ;; There are no tagged commits
+ (let ((commit "4d1653870d4dd70fff1807c182882db1fbf9af5a")
+ (revision "1"))
+ (package
+ (name "r-harmony")
+ (version (git-version "1.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/immunogenomics/harmony")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1gasdldr4aalr9h2q9kmm3y4i7azkgnhdn4bmvsszs7lg9xacw85"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cowplot" ,r-cowplot)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-irlba" ,r-irlba)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
+ ("r-rcppprogress" ,r-rcppprogress)
+ ("r-rlang" ,r-rlang)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)))
+ (home-page "https://github.com/immunogenomics/harmony")
+ (synopsis "Integration of single cell sequencing data")
+ (description
+ "This package provides an implementation of the Harmony algorithm for
+single cell integration, described in Korsunsky et al
+@url{doi.org/10.1101/461954}. The package includes a standalone Harmony
+function and interfaces to external frameworks.")
+ (license license:gpl3))))